PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04863-augustus-gene-0.19-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 153aa MW: 17078.2 Da PI: 8.1943

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04863-augustus-gene-0.19-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.8e-11	59	81	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C+yGd+Ck+ H++ maker-scaffold04863-augustus-gene-0.19-mRNA-1 59 VCNRFVKTGFCQYGDSCKYVHPK 81 6********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	5.3E-4	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	2.52E-15	4	43	No hit	No description
Pfam	PF06220	1.2E-10	5	36	IPR013085	Zinc finger, U1-C type
SMART	SM00356	2.2E-4	54	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.239	54	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-7	58	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	59	81	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-7	59	82	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MPLGKYYCDY CDKEFQDTPY VRKRHLQGLQ HLRNKALWFD SFQFKDANQA YTEGFGKGVC 60 NRFVKTGFCQ YGDSCKYVHP KNNLANVNNQ GISVTGFVDN NQSPIIPGNQ LVGGSFSGDV 120 VRDNMGMSWG NLPPSLKPPP EGGYPSLPSV DWG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023895153.1	1e-109	zinc finger CCCH domain-containing protein 3-like
Swissprot	Q0JP11	5e-42	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2I4EAN8	4e-83	A0A2I4EAN8_JUGRE; zinc finger CCCH domain-containing protein 3 isoform X3
STRING	VIT_14s0060g00610.t01	7e-77	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	4e-50	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]