PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04853-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32347.5 Da    PI: 8.2171
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04853-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.7e-20142196256
                                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                   rk+ ++tkeq  +Le+ F+++ +++ +++++LA+kl+L  rqV vWFqNrRa+ k
  maker-scaffold04853-augustus-gene-0.9-mRNA-1 142 RKKLRLTKEQAAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTK 196
                                                   78889************************************************98 PP
2HD-ZIP_I/II121.73.6e-39142230190
                                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 
                                                   +kk+rl+keq+++LE++F+e+ +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e 
  maker-scaffold04853-augustus-gene-0.9-mRNA-1 142 RKKLRLTKEQAAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTKLKQTEVDCEI 206
                                                   69*************************************************************** PP

                                   HD-ZIP_I/II  66 LkraydalkeenerLekeveeLree 90 
                                                   Lk+++++l++en+rL ke +eL+ +
  maker-scaffold04853-augustus-gene-0.9-mRNA-1 207 LKKCCERLTDENKRLLKELQELK-S 230
                                                   **********************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-18137201IPR009057Homeodomain-like
SuperFamilySSF466892.34E-18138199IPR009057Homeodomain-like
PROSITE profilePS5007117.475138198IPR001356Homeobox domain
SMARTSM003891.4E-16140202IPR001356Homeobox domain
CDDcd000866.58E-17141199No hitNo description
PfamPF000462.1E-17142196IPR001356Homeobox domain
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PfamPF021833.7E-10198232IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-20198241IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVLDDVCNAG LALAIGSHDK QENHDHLQPD HHQEKKKKKR KMEKFSLKYD HLFPSLTLGP  60
SDETSYTYQL ATTKKEAGKA VLAGDSVDYF PNKQASSLSA VSSFSNSSSI KRERELSGGD  120
EEVEIERVSS RVSDEDEEAS PRKKLRLTKE QAAILEDNFK EHATLNPKQK QDLAHKLNLR  180
PRQVEVWFQN RRARTKLKQT EVDCEILKKC CERLTDENKR LLKELQELKS LKPAAPFYMQ  240
LPAATLTMCP SCERVCNGGD GSSTSPFSIG PSKPHFYNPF THPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440KKKKKRK
23441KKKKKRKM
33540KKKKRK
4190198RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884520.11e-172homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-87HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2N9GW231e-146A0A2N9GW23_FAGSY; Uncharacterized protein
STRINGEOY156251e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-70HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]