 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold04853-augustus-gene-0.9-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 287aa MW: 32347.5 Da PI: 8.2171 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold04853-augustus-gene-0.9-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.6 | 5.7e-20 | 142 | 196 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq +Le+ F+++ +++ +++++LA+kl+L rqV vWFqNrRa+ k
maker-scaffold04853-augustus-gene-0.9-mRNA-1 142 RKKLRLTKEQAAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTK 196
78889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 121.7 | 3.6e-39 | 142 | 230 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65
+kk+rl+keq+++LE++F+e+ +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e
maker-scaffold04853-augustus-gene-0.9-mRNA-1 142 RKKLRLTKEQAAILEDNFKEHATLNPKQKQDLAHKLNLRPRQVEVWFQNRRARTKLKQTEVDCEI 206
69*************************************************************** PP
HD-ZIP_I/II 66 LkraydalkeenerLekeveeLree 90
Lk+++++l++en+rL ke +eL+ +
maker-scaffold04853-augustus-gene-0.9-mRNA-1 207 LKKCCERLTDENKRLLKELQELK-S 230
**********************9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MVLDDVCNAG LALAIGSHDK QENHDHLQPD HHQEKKKKKR KMEKFSLKYD HLFPSLTLGP 60
SDETSYTYQL ATTKKEAGKA VLAGDSVDYF PNKQASSLSA VSSFSNSSSI KRERELSGGD 120
EEVEIERVSS RVSDEDEEAS PRKKLRLTKE QAAILEDNFK EHATLNPKQK QDLAHKLNLR 180
PRQVEVWFQN RRARTKLKQT EVDCEILKKC CERLTDENKR LLKELQELKS LKPAAPFYMQ 240
LPAATLTMCP SCERVCNGGD GSSTSPFSIG PSKPHFYNPF THPSAAC
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 34 | 40 | KKKKKRK |
| 2 | 34 | 41 | KKKKKRKM |
| 3 | 35 | 40 | KKKKRK |
| 4 | 190 | 198 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
