PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04778-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARF
Protein Properties Length: 710aa    MW: 77756.9 Da    PI: 7.0365
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04778-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23122223199
                                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTE CS
                                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgr 58 
                                                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r
  maker-scaffold04778-augustus-gene-0.6-mRNA-1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGVTWKFRHIYRGTPRR 184
                                                   89****************************996555555..89********************** PP

                                                   EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                            B3  59 yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                   ++lt+GW+ Fv+ ++L +gD++vF   + +++ l+v+++r+
  maker-scaffold04778-augustus-gene-0.6-mRNA-1 185 HLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCVGIRRA 223
                                                   *************************..4488999****997 PP
2Auxin_resp116.62.2e-38295378183
                                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvv 64 
                                                   aa+ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt++
  maker-scaffold04778-augustus-gene-0.6-mRNA-1 295 AATLAANGQPFEVVYYPRASTPEFCVKAAMVKAAFQIRWCSGMRFKMAFETEDSSRISWfMGTIS 359
                                                   68899************************************************************ PP

                                    Auxin_resp  65 gvsdldpvrWpnSkWrsLk 83 
                                                   +v+ +dp+rWp+S+Wr+L+
  maker-scaffold04778-augustus-gene-0.6-mRNA-1 360 SVQVADPIRWPDSPWRLLQ 378
                                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-38112226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-29116225IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-21121222No hitNo description
SMARTSM010195.7E-21122224IPR003340B3 DNA binding domain
PfamPF023621.8E-21122223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915122224IPR003340B3 DNA binding domain
PfamPF065071.2E-33295378IPR010525Auxin response factor
PROSITE profilePS5174518.816622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MITFMDSKEK LKEVDKCLDP QLWHACAGGM VQMPCVSAKV FYFPQGHAEH ACGAVDFRSC  60
PGGLPPYVLC RVSAIKFMAD PDTDEVFAKI RLVPASRSDQ EFDDNGIGGM NGSEPQEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGV TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PESASGWNPA  240
GGNCGVPYGG FSAFLRDDES KLMRNGGNGS SNGKGNGNGG VMGKGKVRAE SVIEAATLAA  300
NGQPFEVVYY PRASTPEFCV KAAMVKAAFQ IRWCSGMRFK MAFETEDSSR ISWFMGTISS  360
VQVADPIRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VANMPTMHLP FSPPRKKLRM  420
PQHPEFPLDG QLQMPAFSGN LLGPNNPFSC LPDNTPAGMQ GARHAHYGLS LSDLHHNKLQ  480
SGLFPAGFPP LDHAATPTRA QNISMFQKPS VSENASNVSC LLTMAHSTQT SKKRDDVKTP  540
QFVLFGQPIL TEQQISLSCS GDTVSPVRTG NSSSDGNADK LTNFSDGSGS ALHQPGIPER  600
LSCEGFQWYK DNRQENDPNL DTGHCKVFME SEDVGRSLDL SLLGSYEELH RKLADMFGIE  660
NSEALNHVLY RDVKGAVKHI GDELFSDFMK TARRLTILTD SSSDNLWEPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-791839951388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925213.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2N9J4680.0A0A2N9J468_FAGSY; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]