PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04583-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 361aa    MW: 41891.5 Da    PI: 8.9124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04583-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM805.1e-2561482128
                                            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykv..ePwdLpk.....kvkae 54 
                                                    p+GfrF+Ptdeelv  yL +kv+g++    ++ ++ i+e d+y +  eP+++ k     +++++
  maker-scaffold04583-augustus-gene-0.13-mRNA-1   6 PVGFRFRPTDEELVRSYLYPKVTGTQthdlVP-KHDIPEHDLYATntEPSKIWKqfggqNLEEN 68 
                                                    89**********************99655322.345999999865449****743666633333 PP

                                            NAM  55 ek..ewyfFskrdkkyatgkrknratksgyWk..atgk.dkevlsk...kgelvglkktLvfyk 110
                                                    ++  e+ fF++ ++ ++tg+r +r++  gyWk  a+gk  k+vl++   + + +g k+t+ + +
  maker-scaffold04583-augustus-gene-0.13-mRNA-1  69 QEelELLFFTRLKRVSSTGSRIKRTIGGGYWKgdASGKsAKNVLETkskTMKRIGFKETFHYKN 132
                                                    333488**************************777777345566654444445******99984 PP

                                            NAM 111 grapkgektdWvmheyrl 128
                                                     +  +  + +W++he +l
  maker-scaffold04583-augustus-gene-0.13-mRNA-1 133 DQ--SKDSNSWILHELSL 148
                                                    33..34589******876 PP
2NAM78.41.7e-242153522128
                                            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpk.....kvkaeek.. 56 
                                                    p G+rF Ptdeelv +yL +kv g+++++e  i+e d+y  ++ePw++ +     +++++++  
  maker-scaffold04583-augustus-gene-0.13-mRNA-1 215 PEGYRFCPTDEELVLYYLYPKVIGTQTHEEGRIPEHDLYapNTEPWKIWEafggpNLEENQEel 278
                                                    89************************999889*****994458*****6446777333333324 PP

                                            NAM  57 ewyfFskrdkkyatgkrknratksgyWk..atgk.dkevlsk.kgelvglkktLvfykgrapkg 116
                                                    e+ fF++ ++ ++t++r +r++ +g Wk  a+gk  k+vl++ +++ +g kkt+ + +   ++ 
  maker-scaffold04583-augustus-gene-0.13-mRNA-1 279 ELLFFTRLKRVSSTDSRIKRTIGNGCWKgdASGKyAKDVLETmTRTRIGFKKTFHYKND--ESK 340
                                                    88**************************7767776677777677788*******99844..444 PP

                                            NAM 117 ektdWvmheyrl 128
                                                     + +W++he +l
  maker-scaffold04583-augustus-gene-0.13-mRNA-1 341 DNNRWILHELSL 352
                                                    699******876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-244168IPR003441NAC domain
PROSITE profilePS5100528.0955169IPR003441NAC domain
PfamPF023656.7E-176147IPR003441NAC domain
SuperFamilySSF1019412.48E-24207355IPR003441NAC domain
PROSITE profilePS5100525.502214361IPR003441NAC domain
PfamPF023651.6E-16215351IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAMFPVGFR FRPTDEELVR SYLYPKVTGT QTHDLVPKHD IPEHDLYATN TEPSKIWKQF  60
GGQNLEENQE ELELLFFTRL KRVSSTGSRI KRTIGGGYWK GDASGKSAKN VLETKSKTMK  120
RIGFKETFHY KNDQSKDSNS WILHELSLDE SFLRHAKIGD MVVCRLRKHP KKEEIISSTN  180
ASSQTSQNTT LMLEFLRELL RSYSREITMA PTMIPEGYRF CPTDEELVLY YLYPKVIGTQ  240
THEEGRIPEH DLYAPNTEPW KIWEAFGGPN LEENQEELEL LFFTRLKRVS STDSRIKRTI  300
GNGCWKGDAS GKYAKDVLET MTRTRIGFKK TFHYKNDESK DNNRWILHEL SLDKSLLSQA  360
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910674.10.0NAC domain-containing protein 71-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-13TCV-interacting protein