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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04579-augustus-gene-0.18-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | GATA | ||||||||
Protein Properties | Length: 724aa MW: 79200.6 Da PI: 4.7458 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.8e-15 | 219 | 254 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp g++tLCnaCGl+++ kg maker-scaffold04579-augustus-gene-0.18-mRNA-1 219 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 254 *****99999**********************9987 PP | |||||||
2 | GATA | 46.4 | 5.4e-15 | 529 | 565 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ maker-scaffold04579-augustus-gene-0.18-mRNA-1 529 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 565 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.753 | 79 | 114 | IPR010399 | Tify domain |
SMART | SM00979 | 8.1E-12 | 79 | 114 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.7E-12 | 82 | 113 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.215 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.2E-16 | 146 | 188 | IPR010402 | CCT domain |
SMART | SM00401 | 2.6E-12 | 213 | 266 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.156 | 213 | 270 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.92E-11 | 216 | 265 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-15 | 217 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.50E-14 | 218 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.4E-13 | 219 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51320 | 13.016 | 392 | 427 | IPR010399 | Tify domain |
SMART | SM00979 | 6.6E-8 | 392 | 427 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.2E-9 | 395 | 426 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.759 | 460 | 502 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-14 | 460 | 501 | IPR010402 | CCT domain |
SMART | SM00401 | 9.7E-13 | 523 | 576 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.563 | 527 | 579 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.56E-11 | 527 | 579 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-14 | 527 | 570 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.06E-14 | 528 | 571 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 529 | 556 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.3E-13 | 529 | 565 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MAESNHEASI YNSNVQQQQQ QQNEIEDEDD DVVGGEEESI DNPQMRFVPV STLNGDVQEV 60 APNAVFVPGA SDYPPVNTVN GGSDQLTLSF QGEVYVFDAV SPDKVQAVLL LLGGYEIPSG 120 IPAVGTIPLN QRGMNDFSGR SIQPQRAASL SRFREKRKER CFDKKIRYNV RKEVALRMQR 180 KKGQFTSSKA ISEELGSDTS VYSTTQGSGQ DDSMQETICT HCGISSKSTP MMRRGPAGPR 240 TLCNACGLKW ANKGILRDLS KVSNVGIQDP PVKLIEQNNG EANDLVVVTT ATAIVPSSNG 300 DVSAMDIFPQ PSHGMEMVNP QPLQVRPLEE EEEGRENRLV QVPIEMDGDE GGSEYEYMNG 360 RSAQHETMNG GVGGGVEVEA RASGASASAS ASASRTSELT IAFEGEVYVF PAVTPDKVQA 420 VLLLLGGCDI PSSVPSSQFL LQQNSKGIGE TSRGSKLSRR IASLVRFREK RKERCFEKKI 480 RYTCRKEVAQ RMHRKNGQFA SLKNSFKVAG ENWDSSDGTP CPAPILRRCQ HCGISEKSTP 540 AMRRGPAGPR SLCNACGLMW ANKGTLRDLT KAGRTISFDQ NEPETPADIK PSTMEPENSY 600 ANQDEQGSPD DNKPVLLDPE NPSMRSGEQD FLDVAEAVTE HLSIQLDNPS IGLDEQETLD 660 ELANASGTEF EIPENFDDQV LVSTALMLTS MIPAWCLRRR GDRMRWCLNG DGCIDVPPFY 720 KAIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023871942.1 | 0.0 | GATA transcription factor 19-like isoform X1 | ||||
Swissprot | Q8H1G0 | 2e-69 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A2I4F5G6 | 0.0 | A0A2I4F5G6_JUGRE; GATA transcription factor 19-like | ||||
STRING | XP_008237241.1 | 1e-156 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-72 | ZIM-like 1 |