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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold04558-snap-gene-0.13-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
C2H2 |
| Protein Properties |
Length: 320aa MW: 37311.6 Da PI: 8.309 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold04558-snap-gene-0.13-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 20.5 | 1.3e-06 | 48 | 69 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ Cg +F+ + +Lk+H+++H
maker-scaffold04558-snap-gene-0.13-mRNA-1 48 TCQECGATFTKPAYLKQHMQSH 69
6*******************99 PP
|
| 2 | zf-C2H2 | 19 | 3.7e-06 | 75 | 99 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y+Cp dC+ s++rk++L+rH+ H
maker-scaffold04558-snap-gene-0.13-mRNA-1 75 YTCPvdDCHSSYRRKDHLTRHLLQH 99
9********************9887 PP
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| 3 | zf-C2H2 | 16.4 | 2.5e-05 | 104 | 129 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kCp +Cg Fs + n++rH + H
maker-scaffold04558-snap-gene-0.13-mRNA-1 104 FKCPieNCGHEFSYQGNMTRHVNEfH 129
89*******************99888 PP
|
| 4 | zf-C2H2 | 16.2 | 2.9e-05 | 213 | 237 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ C +Fs+ksnL++Hi+ H
maker-scaffold04558-snap-gene-0.13-mRNA-1 213 KCHydGCLHTFSTKSNLHQHIKAvH 237
79*******************9888 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 5.4E-7 | 45 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 4.17E-10 | 46 | 99 | No hit | No description |
| PROSITE profile | PS50157 | 12.05 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.004 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 5.6E-11 | 69 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0032 | 75 | 99 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.827 | 75 | 104 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.77E-6 | 85 | 148 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 9.5E-5 | 102 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.655 | 104 | 134 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.014 | 104 | 129 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 106 | 129 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 23 | 154 | 179 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 156 | 179 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 15 | 182 | 203 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 9.14E-7 | 195 | 249 | No hit | No description |
| PROSITE profile | PS50157 | 11.011 | 212 | 242 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.048 | 212 | 237 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 212 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 214 | 237 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 238 | 266 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 9.2 | 243 | 269 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.517 | 243 | 272 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 245 | 269 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MDEMGEIEKP IFRDIRRYYC EYCGICRKRW KRIRLMGEEE KEGKKSNTCQ ECGATFTKPA 60
YLKQHMQSHS VERLYTCPVD DCHSSYRRKD HLTRHLLQHQ GKLFKCPIEN CGHEFSYQGN 120
MTRHVNEFHS KDCPPISAEP QKQFVCQEIG CGKALCCEPG CMKYFSNDEC LKAHIQSCHQ 180
HITCEICGTK QLRRNIKRHL QIHEDTVSLE RVKCHYDGCL HTFSTKSNLH QHIKAVHLEL 240
KPFACSFTGC GVRFAHKHVR DKHEKTGCHV HTTGDFEESD EQFQSRIRGG RKRKCPTVEM 300
LIRKRISPPS PPSQSDEESD
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
