 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold04550-snap-gene-0.25-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
NAC |
| Protein Properties |
Length: 276aa MW: 31837.3 Da PI: 4.351 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold04550-snap-gene-0.25-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 123.3 | 2.1e-38 | 108 | 234 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.kkvkaeekewyfFskrdkk 67
pG+ F P+d l+v+yL +kv + +l++ ++++++ ++y+++P+ + + + ek wyfF++r++k
maker-scaffold04550-snap-gene-0.25-mRNA-1 108 IPGCMFCPSDYILIVHYLINKVLNYPLPC-DFVEDAeELYNHNPELIAeQYGNRAEKAWYFFAPRKQK 174
69***************************.77888779*********8344455777*********** PP
NAM 68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
y++ kr+nr++ +gyWka g dk+++s ++ ++g k+ Lvfy+g+ p+g kt+W+mheyr+
maker-scaffold04550-snap-gene-0.25-mRNA-1 175 YQNRKRPNRVAGNGYWKAMGADKAIKS-REIVIGHKRKLVFYEGEPPSGDKTNWIMHEYRI 234
***************************.999****************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MCIPLEISSE SDHDSDHTNN YESESPTSPL YSPSRDTSFS SSPSGTFYFD DDEGEESDEE 60
EEEEEPDEEE GNQSLEEVDV SVLKAFLNDK LHQLGEEPQM EYPKLDIIPG CMFCPSDYIL 120
IVHYLINKVL NYPLPCDFVE DAEELYNHNP ELIAEQYGNR AEKAWYFFAP RKQKYQNRKR 180
PNRVAGNGYW KAMGADKAIK SREIVIGHKR KLVFYEGEPP SGDKTNWIMH EYRIDHPITE 240
NDMRALSEKC EKLILSQISV GSFQMRKRPC EGLLAT
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swm_B | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swm_C | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swm_D | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swp_A | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swp_B | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swp_C | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 3swp_D | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_A | 3e-35 | 104 | 258 | 14 | 162 | NAC domain-containing protein 19 |
| 4dul_B | 3e-35 | 104 | 258 | 14 | 162 | NAC domain-containing protein 19 |
| Search in ModeBase |
