PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04550-snap-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 276aa MW: 31837.3 Da PI: 4.351

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04550-snap-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.3	2.1e-38	108	234	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.kkvkaeekewyfFskrdkk 67 pG+ F P+d l+v+yL +kv + +l++ ++++++ ++y+++P+ + + + ek wyfF++r++k maker-scaffold04550-snap-gene-0.25-mRNA-1 108 IPGCMFCPSDYILIVHYLINKVLNYPLPC-DFVEDAeELYNHNPELIAeQYGNRAEKAWYFFAPRKQK 174 69*************************.77888779*****8344455777******* PP NAM 68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 y++ kr+nr++ +gyWka g dk+++s ++ ++g k+ Lvfy+g+ p+g kt+W+mheyr+ maker-scaffold04550-snap-gene-0.25-mRNA-1 175 YQNRKRPNRVAGNGYWKAMGADKAIKS-REIVIGHKRKLVFYEGEPPSGDKTNWIMHEYRI 234 ***********************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-44	103	243	IPR003441	NAC domain
PROSITE profile	PS51005	40.284	107	261	IPR003441	NAC domain
Pfam	PF02365	1.4E-20	109	234	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MCIPLEISSE SDHDSDHTNN YESESPTSPL YSPSRDTSFS SSPSGTFYFD DDEGEESDEE 60 EEEEEPDEEE GNQSLEEVDV SVLKAFLNDK LHQLGEEPQM EYPKLDIIPG CMFCPSDYIL 120 IVHYLINKVL NYPLPCDFVE DAEELYNHNP ELIAEQYGNR AEKAWYFFAP RKQKYQNRKR 180 PNRVAGNGYW KAMGADKAIK SREIVIGHKR KLVFYEGEPP SGDKTNWIMH EYRIDHPITE 240 NDMRALSEKC EKLILSQISV GSFQMRKRPC EGLLAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-35	104	258	14	162	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-35	104	258	14	162	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-35	104	258	14	162	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-35	104	258	14	162	NO APICAL MERISTEM PROTEIN
3swm_A	3e-35	104	258	17	165	NAC domain-containing protein 19
3swm_B	3e-35	104	258	17	165	NAC domain-containing protein 19
3swm_C	3e-35	104	258	17	165	NAC domain-containing protein 19
3swm_D	3e-35	104	258	17	165	NAC domain-containing protein 19
3swp_A	3e-35	104	258	17	165	NAC domain-containing protein 19
3swp_B	3e-35	104	258	17	165	NAC domain-containing protein 19
3swp_C	3e-35	104	258	17	165	NAC domain-containing protein 19
3swp_D	3e-35	104	258	17	165	NAC domain-containing protein 19
4dul_A	3e-35	104	258	14	162	NAC domain-containing protein 19
4dul_B	3e-35	104	258	14	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912167.1	1e-129	NAC transcription factor 32-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-36	NAC-like, activated by AP3/PI