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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04550-snap-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 276aa MW: 31837.3 Da PI: 4.351 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123.3 | 2.1e-38 | 108 | 234 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.kkvkaeekewyfFskrdkk 67 pG+ F P+d l+v+yL +kv + +l++ ++++++ ++y+++P+ + + + ek wyfF++r++k maker-scaffold04550-snap-gene-0.25-mRNA-1 108 IPGCMFCPSDYILIVHYLINKVLNYPLPC-DFVEDAeELYNHNPELIAeQYGNRAEKAWYFFAPRKQK 174 69***************************.77888779*********8344455777*********** PP NAM 68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 y++ kr+nr++ +gyWka g dk+++s ++ ++g k+ Lvfy+g+ p+g kt+W+mheyr+ maker-scaffold04550-snap-gene-0.25-mRNA-1 175 YQNRKRPNRVAGNGYWKAMGADKAIKS-REIVIGHKRKLVFYEGEPPSGDKTNWIMHEYRI 234 ***************************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-44 | 103 | 243 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.284 | 107 | 261 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-20 | 109 | 234 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MCIPLEISSE SDHDSDHTNN YESESPTSPL YSPSRDTSFS SSPSGTFYFD DDEGEESDEE 60 EEEEEPDEEE GNQSLEEVDV SVLKAFLNDK LHQLGEEPQM EYPKLDIIPG CMFCPSDYIL 120 IVHYLINKVL NYPLPCDFVE DAEELYNHNP ELIAEQYGNR AEKAWYFFAP RKQKYQNRKR 180 PNRVAGNGYW KAMGADKAIK SREIVIGHKR KLVFYEGEPP SGDKTNWIMH EYRIDHPITE 240 NDMRALSEKC EKLILSQISV GSFQMRKRPC EGLLAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-35 | 104 | 258 | 14 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-35 | 104 | 258 | 17 | 165 | NAC domain-containing protein 19 |
4dul_A | 3e-35 | 104 | 258 | 14 | 162 | NAC domain-containing protein 19 |
4dul_B | 3e-35 | 104 | 258 | 14 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912167.1 | 1e-129 | NAC transcription factor 32-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-36 | NAC-like, activated by AP3/PI |