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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04550-snap-gene-0.24-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 607aa MW: 70170.1 Da PI: 5.6264 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.4 | 6.5e-41 | 125 | 252 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkk 67 ppG++F+Ptd +l++ yL kk + +l+ + i +v++y++ P+ L + + + e++e+yfF++r +k maker-scaffold04550-snap-gene-0.24-mRNA-1 125 PPGYKFNPTDFDLIMSYLIKKYLNIPLPW-NSIVDVELYNHSPEWLAEeyRKYDEQEELYFFTPRYRK 191 89***************************.78**************8523334466799********* PP NAM 68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 y++gkr+ ra+ +gyWkatg dke+ s+kg +vg kktLvfy+g+ap+g kt+W+m ey++ maker-scaffold04550-snap-gene-0.24-mRNA-1 192 YPNGKRPDRAAGDGYWKATGADKEIESNKGITVGYKKTLVFYRGKAPSGDKTNWIMYEYKI 252 ***********************************************************86 PP | |||||||
2 | NAM | 140.1 | 1.4e-43 | 343 | 469 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkky 68 ppG++F+P++ el+ +yLk+k+ g++l+ + i +v++y++ P+ L + + +++ewyfF++r++ky maker-scaffold04550-snap-gene-0.24-mRNA-1 343 PPGYKFDPSEFELIIFYLKRKILGEHLPW-NKIMDVELYNHSPEWLTeQYPQYGKNEWYFFTPRERKY 409 89***************************.77**************8455566889************ PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g r+nra+ +g+Wkatg dk+++sk++ l+g +k Lvfy+g+ pkgekt+W+mheyr+ maker-scaffold04550-snap-gene-0.24-mRNA-1 410 KNGVRPNRAAGDGFWKATGADKKIKSKTEILIGFRKALVFYRGKPPKGEKTNWIMHEYRI 469 **********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-46 | 119 | 275 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.901 | 124 | 278 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-20 | 125 | 252 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-52 | 334 | 495 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.438 | 342 | 495 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-23 | 343 | 469 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MESNHDHQQS KPIMANHNRQ NNNPSLMAPG ITNQVMISNI NPTTQSPQAL NVPRSSTSTY 60 SSPPSVVIDP PEPSLDDEEE QEEEPNQQSE EVDELGLERI LNKLLLEYDD EPEKQYHNFD 120 NVHPPPGYKF NPTDFDLIMS YLIKKYLNIP LPWNSIVDVE LYNHSPEWLA EEYRKYDEQE 180 ELYFFTPRYR KYPNGKRPDR AAGDGYWKAT GADKEIESNK GITVGYKKTL VFYRGKAPSG 240 DKTNWIMYEY KIKHPPLTRS SENDMRLDKW VLCNAIHNIN NATESPRSNE SDSVVDADDD 300 QEQGEELQDE EEVAVNSGSI QDLIQLDDNP NMNYCSFDTL DPPPGYKFDP SEFELIIFYL 360 KRKILGEHLP WNKIMDVELY NHSPEWLTEQ YPQYGKNEWY FFTPRERKYK NGVRPNRAAG 420 DGFWKATGAD KKIKSKTEIL IGFRKALVFY RGKPPKGEKT NWIMHEYRIN HPPLTKRNPD 480 DMRLDKWVLC KIYWKSESNK SSKPQQSQNE ICSTSSQDGD RKARNGAMIN QSHQNVPNLD 540 HMSSRMANHF QPMGCNNYGP PHRAHMPSRF SNEIQALAGN HGNPPQAPSF PTQLQPMATD 600 YGTLPQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 125 | 498 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 125 | 498 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 125 | 498 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 125 | 498 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 125 | 498 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-45 | 125 | 498 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 125 | 498 | 15 | 169 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912168.1 | 7e-94 | NAC transcription factor 25-like | ||||
TrEMBL | A0A3S3PTQ0 | 1e-101 | A0A3S3PTQ0_9MAGN; NAC domain-containing protein 45 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-50 | NAC-like, activated by AP3/PI |