PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04455-snap-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 452aa    MW: 50669.6 Da    PI: 6.2466
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04455-snap-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-073954272254
                                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                 +yp++e++++L +++gL+ +q+ +WF N+R +
  maker-scaffold04455-snap-gene-0.25-mRNA-1 395 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 427
                                                69*****************************87 PP
2ELK28.73e-10348369122
                                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                                ELKh+L+++Y+++++++++E++
  maker-scaffold04455-snap-gene-0.25-mRNA-1 348 ELKHELKQGYKEKIVDIREEIL 369
                                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-20180224IPR005540KNOX1
PfamPF037908.0E-18182223IPR005540KNOX1
SMARTSM012564.4E-29236291IPR005541KNOX2
PfamPF037913.0E-21240290IPR005541KNOX2
SMARTSM011886.1E-4348369IPR005539ELK domain
PROSITE profilePS512139.969348368IPR005539ELK domain
PfamPF037891.1E-6348369IPR005539ELK domain
PROSITE profilePS5007111.758368431IPR001356Homeobox domain
SuperFamilySSF466895.13E-16370433IPR009057Homeodomain-like
SMARTSM003891.0E-10370435IPR001356Homeobox domain
CDDcd000862.25E-11371432No hitNo description
Gene3DG3DSA:1.10.10.609.4E-25375432IPR009057Homeodomain-like
PfamPF059201.3E-17388427IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHHYSEQH HQTIPDPSDP NSKPGSDHHT PNWLNSALLR TQSQYNDTTT  60
TNNNNNNNNN NNSAATNNSN TNFLNLHTAS ESASQSSNQW LSRPILHRNH SDVIDDVAGD  120
SMIAASMSHE SAEHKSHHHS NNNDSLNQNN KSDHQAMGVG VVVESSGGGG GDGVMNWQNA  180
RYKAEILTHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS ALGHGTQPLV  240
GDDKELDQFM THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA  300
TMSDDEDDQV DSDANLFDGS LDGPDTMGFG PLIPTESERS LMERVRQELK HELKQGYKEK  360
IVDIREEILR KRRAGKLPGD TTSVLKSWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW  420
FINQRKRNWH SNPSTSTVLK SKRKREAGRE DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12371435872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424444RKRNWHSNPSTSTVLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888760.0FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884677.10.0homeobox protein knotted-1-like 3 isoform X3
RefseqXP_023884678.10.0homeobox protein knotted-1-like 3 isoform X4
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2N9IXC50.0A0A2N9IXC5_FAGSY; Uncharacterized protein
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3