PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04358-augustus-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 267aa    MW: 30167.9 Da    PI: 6.8857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04358-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT++Ed+ll d++k +G g W+++ +  g++R++k+c++rw++yl
  maker-scaffold04358-augustus-gene-0.15-mRNA-1 14 KGAWTAQEDKLLTDYIKAHGEGKWEKVRKDTGLKRCGKSCRLRWLNYL 61
                                                   79********************************************97 PP
2Myb_DNA-binding50.16.5e-1667112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+ T +E++l ++++k+lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold04358-augustus-gene-0.15-mRNA-1  67 RGNITNDEEDLVIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112
                                                    7999******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-22664IPR009057Homeodomain-like
PROSITE profilePS5129416.259961IPR017930Myb domain
SuperFamilySSF466891.01E-2812108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002497.5E-151461IPR001005SANT/Myb domain
CDDcd001671.36E-101661No hitNo description
PROSITE profilePS5129424.5662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2365114IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1467112IPR001005SANT/Myb domain
CDDcd001674.73E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRSPSCSKE GLNKGAWTAQ EDKLLTDYIK AHGEGKWEKV RKDTGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TNDEEDLVIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT VLAKREQRKP  120
LNHIKTAKKA ITRKVDESQN PDVIHSKEKS PSMHGNVVNS IEVHSGSSDG LSPSTSTEEN  180
SLDLLMDFDV GEIGLSDFLN SDFTKLNDFE MFNMNSLIEG DVSKPAFVSH ALLSPKDVSE  240
NWSVQASMES DFRSLTSFLE SAEEWTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899957.10.0transcription factor MYB8-like
TrEMBLA0A2N9EGI81e-151A0A2N9EGI8_FAGSY; Uncharacterized protein
STRINGEOY300282e-94(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-60myb domain protein 3