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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold04348-snap-gene-0.24-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 357aa MW: 40514.8 Da PI: 9.8856 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold04348-snap-gene-0.24-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 56.8 | 4.1e-18 | 57 | 156 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHH CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWk 66
f v+ ps v ++++ +fa+++ k ++ ++l++ +gr+W+vk+++ + + ++++GWk
maker-scaffold04348-snap-gene-0.24-mRNA-1 57 FMVVMQPSCVYPGTSMSISPSFAKKYTRK-MSGEFVILRSFNGRTWSVKFSFyeAIAQTKAMFQQGWK 123
667788888888999***********654.45668***************99876666669******* PP
HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99
eF+++n+Lk+g +++F+l++ e ++v +fr+
maker-scaffold04348-snap-gene-0.24-mRNA-1 124 EFARDNNLKVGAVCIFELTNGIEVAFKVAIFRA 156
*****************9987444478888885 PP
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2 | B3 | 38.4 | 2.2e-12 | 272 | 354 | 17 | 98 |
E--HH.H.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-E CS
B3 17 vlpkk.faeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDf 79
++p+k f++++ + + +++l++ d r W +kl y r ++g+ + l++GW F+++n L+++D+
maker-scaffold04348-snap-gene-0.24-mRNA-1 272 YIPRKgFTKDYTKGSVLTVKLQVVD---RLWPMKL-YayeRMYQGSfCKLSSGWTAFARENTLQVRDV 335
6776614555533334555555555...99*****.3356555555799******************* PP
EEEEE-SSSEE..EEEEE- CS
B3 80 vvFkldgrsefelvvkvfr 98
+vF+l+ r++ l+v++fr
maker-scaffold04348-snap-gene-0.24-mRNA-1 336 CVFELIMRDDVVLKVHIFR 354
******9999999***997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MNATPLTEPY FQAEECSRAT KRCPKSEVIE RIQPLSASEK DRALQRVRAF VSNNLFFMVV 60 MQPSCVYPGT SMSISPSFAK KYTRKMSGEF VILRSFNGRT WSVKFSFYEA IAQTKAMFQQ 120 GWKEFARDNN LKVGAVCIFE LTNGIEVAFK VAIFRAANDI DCPLLNGSAH RGGGNRVGHK 180 SSPLVKLESD CNLDDVSFSH DQCPAKDGCV SMSTNRRRLK AKALVKKQDY KALEKKQELV 240 TSNGKAENLV RANAFKSENP LYVSLPHGIM NYIPRKGFTK DYTKGSVLTV KLQVVDRLWP 300 MKLYAYERMY QGSFCKLSSG WTAFARENTL QVRDVCVFEL IMRDDVVLKV HIFRCFD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 9e-17 | 31 | 354 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-17 | 31 | 354 | 17 | 141 | B3 domain-containing transcription factor VRN1 |