PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04279-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 280aa    MW: 32599.8 Da    PI: 6.4041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04279-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+eEd+ l+++++++G g+W++ ++  g+ R++k+c++rw +yl
  maker-scaffold04279-augustus-gene-0.24-mRNA-1 14 KGPWTPEEDQVLINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                                                   79******************************99************97 PP
2Myb_DNA-binding50.74e-1667112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  maker-scaffold04279-augustus-gene-0.24-mRNA-1  67 RGNFSREEEDTIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                                    89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.711961IPR017930Myb domain
SuperFamilySSF466893.49E-3110108IPR009057Homeodomain-like
SMARTSM007171.8E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001676.77E-111661No hitNo description
PROSITE profilePS5129425.75462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665117IPR009057Homeodomain-like
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002493.5E-1567112IPR001005SANT/Myb domain
CDDcd001676.74E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDQVLINYIQ LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEDTIIK LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKKLKQNQ  120
ANPETKRSPN NNISKYYNEA VHELELEPVN FSSHAKSESL EYRAVSPQEC SSDMSTVTMS  180
DNNNENKVCL KVESPRNFPE MDEKFWSELS TENSEVVMRE FSAVDGDAQL QFQFSPLMTM  240
EPIYGYGSNM HDSMDYFWFN LFNRAGELPE LPDVYQKYLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916642.10.0transcription factor MYB4-like
TrEMBLA0A2I4EG801e-138A0A2I4EG80_JUGRE; myb-related protein Myb4-like
STRINGPOPTR_0005s24550.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-81myb domain protein 14