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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold04275-augustus-gene-0.10-mRNA-1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
AP2 |
| Protein Properties |
Length: 411aa MW: 45422.7 Da PI: 6.3904 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold04275-augustus-gene-0.10-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 52.5 | 1.2e-16 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr +k+ ++Wv+e r+p +k+ r++lg+f tae+Aa+a++ a +l+g
maker-scaffold04275-augustus-gene-0.10-mRNA-1 47 PVYRGVR-RKNPQKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAVIALRG 97
68****9.777*******9998...347***********************9998 PP
|
| 2 | AP2 | 49.8 | 8.7e-16 | 227 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ y+GVr +k+ +Wv+e r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g
maker-scaffold04275-augustus-gene-0.10-mRNA-1 227 PVYRGVR-RKNPWKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 277
68****9.66689*****9998...347*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MGSDICSWEF ESGSGGIVNL SDEEVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPQKW 60
VCEMREPNKK SRIWLGTFPT AEMAARAHDV AVIALRGRSG CLNFEDSMWR LPIPASTTAK 120
DIQRAAAEAA RAFRPPVLFE LRSSVIGIAL YVVEPKGSTL DLPLFSTYMD VLRHQSDPQY 180
LTGSDICSWE FESGSGDIVN LDDDVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPWKW 240
VCEMREPNKK SRIWLGTFPT AEMAARAHDV AAIALRGKSG CLNFADSAWR LPVPASATAK 300
DIQRAAAEAA EAFRPVELDE GFGDESRWKL ESAAAAAVVV AAAAAVAATA AAVAVEMEEE 360
EGVFFMDEEA VFGMPGLLAN LAEGMLLPPP RCYDGDDLGT DTDMSLWSYS I
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Guttikonda SK, et al.
Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
[PMID:25192890] - Zhang T, et al.
Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
Plant Physiol. Biochem., 2015. 94: p. 153-64
[PMID:26093308] - Carlow CE, et al.
Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
Plant Physiol. Biochem., 2017. 118: p. 306-319
[PMID:28675818] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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