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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04275-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | AP2 | ||||||||
Protein Properties | Length: 411aa MW: 45422.7 Da PI: 6.3904 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 47 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k+ ++Wv+e r+p +k+ r++lg+f tae+Aa+a++ a +l+g maker-scaffold04275-augustus-gene-0.10-mRNA-1 47 PVYRGVR-RKNPQKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAVIALRG 97 68****9.777*******9998...347***********************9998 PP | |||||||
2 | AP2 | 49.8 | 8.7e-16 | 227 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k+ +Wv+e r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g maker-scaffold04275-augustus-gene-0.10-mRNA-1 227 PVYRGVR-RKNPWKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 277 68****9.66689*****9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-11 | 47 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-19 | 48 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-26 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-28 | 48 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.048 | 48 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.67E-26 | 49 | 107 | No hit | No description |
PRINTS | PR00367 | 6.4E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-11 | 227 | 277 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-19 | 228 | 287 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-26 | 228 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-28 | 228 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.903 | 228 | 285 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.32E-27 | 229 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGSDICSWEF ESGSGGIVNL SDEEVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPQKW 60 VCEMREPNKK SRIWLGTFPT AEMAARAHDV AVIALRGRSG CLNFEDSMWR LPIPASTTAK 120 DIQRAAAEAA RAFRPPVLFE LRSSVIGIAL YVVEPKGSTL DLPLFSTYMD VLRHQSDPQY 180 LTGSDICSWE FESGSGDIVN LDDDVMLASQ NPKKRDGRKK FKETRHPVYR GVRRKNPWKW 240 VCEMREPNKK SRIWLGTFPT AEMAARAHDV AAIALRGKSG CLNFADSAWR LPVPASATAK 300 DIQRAAAEAA EAFRPVELDE GFGDESRWKL ESAAAAAVVV AAAAAVAATA AAVAVEMEEE 360 EGVFFMDEEA VFGMPGLLAN LAEGMLLPPP RCYDGDDLGT DTDMSLWSYS I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921459.1 | 1e-135 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 8e-69 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A3Q7FF31 | 1e-126 | A0A3Q7FF31_SOLLC; Uncharacterized protein | ||||
STRING | POPTR_0012s13870.1 | 2e-84 | (Populus trichocarpa) | ||||
STRING | EMJ19511 | 1e-84 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-59 | dehydration response element B1A |
Publications ? help Back to Top | |||
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