PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04113-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 790aa    MW: 86829.4 Da    PI: 6.6068
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04113-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-191775357
                                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                  k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  maker-scaffold04113-augustus-gene-0.9-mRNA-1 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                                                  5679*****************************************************97 PP
2START180.11.3e-561613692205
                                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHC CS
                                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveell 66 
                                                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l
  maker-scaffold04113-augustus-gene-0.9-mRNA-1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEIL 224
                                                   789*******************************************************.888888 PP

                                                   CCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS
                                         START  67 ddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128
                                                   +d++ W + ++++++++v+s++  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++
  maker-scaffold04113-augustus-gene-0.9-mRNA-1 225 KDRPTWFHGCRAVDVINVLSTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCER 289
                                                   8888*****************999***************************************** PP

                                                   EEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS
                                         START 129 Svdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190
                                                   S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ 
  maker-scaffold04113-augustus-gene-0.9-mRNA-1 290 SLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLYESSTL 354
                                                   ********9988899************************************************** PP

                                                   HHHHHHHHHTXXXXX CS
                                         START 191 egaktwvatlqrqce 205
                                                    ++kt++a+l+++++
  maker-scaffold04113-augustus-gene-0.9-mRNA-1 355 LAQKTTMAALRHLRQ 369
                                                   **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751276IPR001356Homeobox domain
SMARTSM003895.2E-161480IPR001356Homeobox domain
SuperFamilySSF466899.84E-171680IPR009057Homeodomain-like
CDDcd000867.23E-171777No hitNo description
PfamPF000462.0E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-181975IPR009057Homeodomain-like
CDDcd146861.06E-669108No hitNo description
PROSITE profilePS5084825.045151365IPR002913START domain
CDDcd088754.19E-81155370No hitNo description
Gene3DG3DSA:3.30.530.202.6E-23160366IPR023393START-like domain
SMARTSM002341.3E-41160370IPR002913START domain
SuperFamilySSF559611.79E-38160372No hitNo description
PfamPF018523.1E-54161369IPR002913START domain
PfamPF086704.5E-15742789IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MMAVSSSCNK LQMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSYFRQH  120
TQNATLATTD TSCESVVTSG QHHLTPQHPP KDASPAGLIS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPTW FHGCRAVDVI  240
NVLSTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LNNTQNGPSM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHV VDHMDLEPWS VPEVLRPLYE SSTLLAQKTT  360
MAALRHLRQI SQEHSQPNVS GWGRRPAALR ALSQRLSKGF NEAVNGFTDE GWSMLESDGI  420
DDVTILVNSS PAKMMGGNIS YPNGFQSMSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADSSIDAYSA AAIKAGPCSL PGVRAGSFGG QVILPLAHTI EHEEASDSFM EVIKLESMGH  540
YREDMMMAGD IFLLQLCSGV DENAVGNCAE LIFAPIDASF SDDAPIIPSG FRIIPLDSGI  600
DSSSPNRTLD LASALEVGPT GNRASGENSG QCGSTKSVMT IAFQFAFEIH LQDNVAAMAR  660
QYVRSIIAAV QRVALVLSPS HFGSHSGIRP PPGTPEAHTL ARWICQSYRC YLGVELLKSE  720
GSEPILKTLW HHSDAVMCCS LKGFMCLQGG ICLSSMGRPI SYERAVAWKV LNEEENAHCI  780
CFMFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918167.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2I4DF340.0A0A2I4DF34_JUGRE; homeobox-leucine zipper protein ATHB-15-like
STRINGEOY297710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]