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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04107-augustus-gene-0.9-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 44524.5 Da PI: 6.2911 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.4 | 8.3e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFs 62 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs maker-scaffold04107-augustus-gene-0.9-mRNA-1 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQEvcKIGTtPQNDWYFFS 78 69****************************.9***************953433332456****** PP NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++dkky+tg+r+nrat++g+Wkatg+dk +ls + + +g++ktLvfy+grap+g k+dW+mheyr maker-scaffold04107-augustus-gene-0.9-mRNA-1 79 HKDKKYPTGTRTNRATTAGFWKATGRDKVILS-NCRRIGMRKTLVFYRGRAPHGLKSDWIMHEYR 142 ********************************.8889***************************9 PP NAM 128 l 128 l maker-scaffold04107-augustus-gene-0.9-mRNA-1 143 L 143 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-58 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.164 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QEVCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATTAGFWK ATGRDKVILS NCRRIGMRKT 120 LVFYRGRAPH GLKSDWIMHE YRLDDNVTDT DISNAMGEAS QEEGWVVCRI FKKKNLHKTL 180 DSPMSSSFTA ETRSQMFDSC NGGALEQMLQ YVGNGKEEEM NEAKSSARTY LRPIETGMKN 240 GYHERFMKLP SLESPNSTSS QCYYQHNIHP EMIIENEGSS VTNPNSVYNQ MDSAALTNWA 300 ALDRLVASQL NGQTEASRQL ACFNDPTNTM PYCSTDHDLQ FSTLRSSSSS SNRSYHPTQD 360 YNSEIDLWSF ARSSSSFSSS DDPLCHVSNA P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 15 | 175 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023896447.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-143 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2N9IQC3 | 0.0 | A0A2N9IQC3_FAGSY; Uncharacterized protein | ||||
STRING | EOX95598 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-129 | NAC family protein |