![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold04103-augustus-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36977.2 Da PI: 8.8002 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.7e-51 | 19 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFsk 63 pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk + +++ewyfF++ maker-scaffold04103-augustus-gene-0.16-mRNA-1 19 LPGFRFHPTDEELVAFYLRRKVDKKTISM-ELIKQIDIYKHDPWDLPKasGSTVKDTEWYFFCR 81 59***************************.99***************6333344888******* PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmh 124 r +ky+++ r+nr+t sg+Wkatg dk+v+s+ ++ +glkktLv+y+g+a +g+ktdW+mh maker-scaffold04103-augustus-gene-0.16-mRNA-1 82 RGRKYRNSIRPNRVTGSGFWKATGIDKPVYSTggeGRDCIGLKKTLVYYRGTAGNGSKTDWMMH 145 *******************************96554555************************* PP NAM 125 eyrl 128 e+rl maker-scaffold04103-augustus-gene-0.16-mRNA-1 146 EFRL 149 **98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-54 | 16 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.175 | 18 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 20 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MEKMSNKGTS QLEDDVDQLP GFRFHPTDEE LVAFYLRRKV DKKTISMELI KQIDIYKHDP 60 WDLPKASGST VKDTEWYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDKPV YSTGGEGRDC 120 IGLKKTLVYY RGTAGNGSKT DWMMHEFRLP APTDTNTNTN TNAKLDNAKS TAQEAEIWTL 180 CRIFKRNLSH RKYTPDWREL STKRHQADTS SKACSGESSN NRESYINFGA PFIFQNEHNN 240 EIKTVNRINN ESNQLHVGQL SSSIAQPPSS SSIAQPPSSS SITKLPSSSL SFPINPVPDA 300 NEFFAYENWD ELRSVVEFAY DPSLM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 11 | 192 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 11 | 192 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 11 | 192 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 11 | 192 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 11 | 192 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 11 | 192 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 11 | 192 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023926837.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2N9FTZ1 | 1e-158 | A0A2N9FTZ1_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_024488m | 1e-133 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-84 | NAC family protein |