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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold04069-snap-gene-0.18-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
NAC |
| Protein Properties |
Length: 189aa MW: 21618.4 Da PI: 4.5485 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold04069-snap-gene-0.18-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 82.5 | 8.7e-26 | 8 | 116 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkky 68
lppGf+F Ptdeelv ++L +k++ +++ ++i+++d++ ++Pw+++ +
maker-scaffold04069-snap-gene-0.18-mRNA-1 8 LPPGFHFCPTDEELVLHFLLRKASLLPCHP-DIIPDLDLCLHDPWEFN-GI----------------- 56
79*************************999.99**************7.22................. PP
NAM 69 atgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ +n +tk+gyW + g d++++++ g++vg+kk Lvfy g+ap g++tdW+m+ey+l
maker-scaffold04069-snap-gene-0.18-mRNA-1 57 -NKVTENWITKNGYWMELGIiDEPIVTSAGNKVGIKKYLVFYIGEAPGGVETDWIMQEYHL 116
.2234577999********8799************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MGDGSVNLPP GFHFCPTDEE LVLHFLLRKA SLLPCHPDII PDLDLCLHDP WEFNGINKVT 60
ENWITKNGYW MELGIIDEPI VTSAGNKVGI KKYLVFYIGE APGGVETDWI MQEYHLCNHD 120
LRGALHNRRG KRKIDCSKWV LCRVYERKGN FAQWLCNSDD EDNGTELSSP DEMFLSAIDD 180
EFDDTSFPK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-28 | 5 | 150 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-28 | 5 | 150 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 1e-28 | 5 | 150 | 14 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 1e-28 | 5 | 150 | 14 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
