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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03906-augustus-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | GRAS | ||||||||
Protein Properties | Length: 579aa MW: 64401.8 Da PI: 6.214 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 339.6 | 5.6e-104 | 239 | 578 | 30 | 373 |
GRAS 30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +s++gdp++R+ yf eAL +rl+ + k+l++ +t+ +++ + +k++++++P+ kf maker-scaffold03906-augustus-gene-0.14-mRNA-1 239 SVSEHGDPIERVGYYFSEALYSRLSV---QAEKSLTMVQTT---TEDFTLTYKALNDACPYSKF 296 6899*********************9...777888888887...7899999************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..s 154 +hltaNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g maker-scaffold03906-augustus-gene-0.14-mRNA-1 297 AHLTANQAILEATATATKIHIVDFGIVQGVQWAALLQALATRSNGKPtMIRISGIPAPALGtsP 360 *******************************************887779*********999999 PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 + +l +tg+rL++fA+ l+++fef++ v + +++l+ +++rv+p+E+laVn++lql++llde maker-scaffold03906-augustus-gene-0.14-mRNA-1 361 AASLFATGNRLREFANILKLNFEFEP-VLTPIQELNESSFRVEPDEVLAVNFMLQLYNLLDEAP 423 99************************.799******************************8877 PP GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 + + L+l ksl+Pk+v++ e e+++n+ F++r +al+yysa+f+sle +l r+s er maker-scaffold03906-augustus-gene-0.14-mRNA-1 424 VAVE---TALRLAKSLNPKIVTLGEYEVSLNRVGFFNRCKNALRYYSAVFESLEPNLTRDSPER 484 6666...9******************************************************** PP GRAS 283 ikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 i vEr llgr+i v+ e+ e +rer+e +e+W+ +e++GF+pv+ls++a++qa+ ll +++ maker-scaffold03906-augustus-gene-0.14-mRNA-1 485 IQVERLLLGRRIAGVIGPEEPEtKRERMEDKEQWKVLMESSGFEPVALSHYAVSQARILLWNYN 548 ******************999989**************************************** PP GRAS 346 .sdgyrveeesgslv.lgWkdrpLvsvSaW 373 s y++ e+ ++ l W++ pL+ vS+W maker-scaffold03906-augustus-gene-0.14-mRNA-1 549 ySSSYSLIESPPGFLsLAWNEVPLLNVSSW 578 9999*99888766666************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.078 | 179 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-101 | 239 | 578 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MRSRFPKRSK GDDVSETAIS TRRRPTCHGL RFWGVGSTTY VKVPEQSGRE KVVHVDVYDL 60 VLSFRAIRSH FRMGATSWMS NKEQRLSPLR FQKERKLCKK RPAFSDPFQV AGGPDAGEPG 120 FPFPNLDQDQ TGFRFPDFGG GGGGEFDSDE WMDSLMGGGD STDSSNLPSG CDAWQNNADF 180 GIYGADPFTT CPSRLSGRCS PPSDLNRVIF PDSQKSPSLP QVPSWTPPPP PQPQQPPKSV 240 SEHGDPIERV GYYFSEALYS RLSVQAEKSL TMVQTTTEDF TLTYKALNDA CPYSKFAHLT 300 ANQAILEATA TATKIHIVDF GIVQGVQWAA LLQALATRSN GKPTMIRISG IPAPALGTSP 360 AASLFATGNR LREFANILKL NFEFEPVLTP IQELNESSFR VEPDEVLAVN FMLQLYNLLD 420 EAPVAVETAL RLAKSLNPKI VTLGEYEVSL NRVGFFNRCK NALRYYSAVF ESLEPNLTRD 480 SPERIQVERL LLGRRIAGVI GPEEPETKRE RMEDKEQWKV LMESSGFEPV ALSHYAVSQA 540 RILLWNYNYS SSYSLIESPP GFLSLAWNEV PLLNVSSWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-143 | 239 | 578 | 32 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075848.1 | 0.0 | scarecrow-like protein 4 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A2N9EP26 | 0.0 | A0A2N9EP26_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_003937m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6280 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50650.1 | 1e-177 | GRAS family protein |