PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03703-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 613aa    MW: 68124.3 Da    PI: 4.491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03703-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.9e-53111431128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFs 62 
                                                    lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k+++ ew+fF+
  maker-scaffold03703-augustus-gene-0.17-mRNA-1  11 LPLGFRFRPTDEELINHYLRLKINGRDSEV-QVIREIDVCKWEPWDLPglSVIKTDDPEWFFFC 73 
                                                    699************************999.99***************6447888899****** PP

                                            NAM  63 krdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWv 122
                                                    +rd+ky++g+r+nrat++gyWkatgkd+++ s+    +++ +g+kktLvfy+grapkge+t+W+
  maker-scaffold03703-augustus-gene-0.17-mRNA-1  74 PRDRKYPNGHRSNRATDAGYWKATGKDRTIRSRksssNTSMIGMKKTLVFYRGRAPKGERTSWI 137
                                                    ********************************966666666*********************** PP

                                            NAM 123 mheyrl 128
                                                    mheyr+
  maker-scaffold03703-augustus-gene-0.17-mRNA-1 138 MHEYRA 143
                                                    ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-614166IPR003441NAC domain
PROSITE profilePS5100558.12611166IPR003441NAC domain
PfamPF023652.1E-2712142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGAAVLTMES LPLGFRFRPT DEELINHYLR LKINGRDSEV QVIREIDVCK WEPWDLPGLS  60
VIKTDDPEWF FFCPRDRKYP NGHRSNRATD AGYWKATGKD RTIRSRKSSS NTSMIGMKKT  120
LVFYRGRAPK GERTSWIMHE YRATEKDLDG TGPGQAAFVL CRLFHKPEEK SPVSKYDEVD  180
PTGLSPTTTK SSPDDTLSDV VQLQETATSV MPVRSQSEGI KRWLTDKSDN MTPNALVPAE  240
TGSNSYVPSD VDDHVPEEDA LEVNQQPSCG EIDFQDFPTL QSQIQMEIAP QVGSPFPSDF  300
GNGNNALTFQ DGTSEQDISL TELLDEFLNN HDDNSFDESA SQKNSFVGTD TLFTGQAVPS  360
GSFYVKDGGA YSDADTEMAQ LQRDSEMEVS GWFNGHVDNE HVYPNQELWG NDLWDNSVGQ  420
DTLSVYSAVC SSLAPSEEPT DRKEPDNYSS VPVGGTGIKI RTREPQNRPT FGNIPFQGTA  480
PRRIRLQLQC SGESVCHSEV GGPSCSEEDE VQSTVTKAEE ASEHCTPVVE IEEQSELLKS  540
EESRGTNEES SAKLRFRVKR DTLPGGSQLE MSEFVKAPAL HHAPRSSLVY IAGVSLVVVM  600
SVVFIGVWRY FKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46616612165NO APICAL MERISTEM PROTEIN
1ut4_B3e-46616612165NO APICAL MERISTEM PROTEIN
1ut7_A3e-46616612165NO APICAL MERISTEM PROTEIN
1ut7_B3e-46616612165NO APICAL MERISTEM PROTEIN
3swm_A3e-46616615168NAC domain-containing protein 19
3swm_B3e-46616615168NAC domain-containing protein 19
3swm_C3e-46616615168NAC domain-containing protein 19
3swm_D3e-46616615168NAC domain-containing protein 19
3swp_A3e-46616615168NAC domain-containing protein 19
3swp_B3e-46616615168NAC domain-containing protein 19
3swp_C3e-46616615168NAC domain-containing protein 19
3swp_D3e-46616615168NAC domain-containing protein 19
4dul_A3e-46616612165NAC domain-containing protein 19
4dul_B3e-46616612165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927949.10.0protein NTM1-like 9
TrEMBLA0A2N9IEK60.0A0A2N9IEK6_FAGSY; Uncharacterized protein
STRINGPOPTR_0011s15230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-133NAC transcription factor-like 9