PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03669-augustus-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 661aa    MW: 73562.7 Da    PI: 9.2404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03669-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-101062246
                                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
                                Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                                                   + W t+E++ll++av+++G+++W+++++++           +t+ +ck ++++
  maker-scaffold03669-augustus-gene-0.21-mRNA-1 10 QIWGTWEELLLACAVHRYGTESWDSVSAELRkrsattlhHVLTPHSCKQKYLD 62
                                                   67*****************************7777776644677777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-5866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-4962IPR009057Homeodomain-like
SuperFamilySSF466895.22E-5967IPR009057Homeodomain-like
PfamPF002498.1E-101063IPR001005SANT/Myb domain
CDDcd001671.88E-51260No hitNo description
SMARTSM002972.0E-9267376IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.6E-14268373IPR001487Bromodomain
SuperFamilySSF473703.53E-16271379IPR001487Bromodomain
CDDcd043691.96E-12281371No hitNo description
PfamPF004394.5E-10283360IPR001487Bromodomain
PROSITE profilePS5001411.16286357IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEKQSFPEKQ IWGTWEELLL ACAVHRYGTE SWDSVSAELR KRSATTLHHV LTPHSCKQKY  60
LDLQRRFNQN NHLDELRKLR VAELKREVQR YDLSIVSLQL KVKELTEEHV QEDEKATEKS  120
DLKIIVEDEN EAKDAEPVNT SPENDAGEVA PCGDSDKESN STDPKSEVPE TGGEETEKEA  180
EQGEPVGRGS GPVEEATRPV VEDSYNGSSD TVVKGSAAEE KGKLGGQSGE LWESVSESKG  240
GGGEEATKES NSDVQSSACN EDQSPATTKP SSVQSHPLIY FLDTLRSHCS DSFFECRLQT  300
QETSNYMSLI RQHVDLKTIQ TRLEEGCYSG NDSKFFRDLL LLFNNAIFFF DKKSSEYMSA  360
IKLRRIVLNE MASKINLKPG PERKEEEKPV PSLPQCIKSD PEPSDSLLLK TKISIPLTAC  420
RKRSSITAKA LASSSPGPDK KKEQMATLKD EKPVVELNQH DKSSEKTEEN RVTKKRTRER  480
SKINSRNSSK NRNRGRTNPN TNKNKNSDAN SNSGFLIKGV SQNEISESRH EKEKKNATTT  540
FNASAKKKSA ANFLNRMKRN SSSPNCSSLL ETLKSCDNSK GGAEQKKNGN GKGDLRREQT  600
SSRKGSRGKQ EKMQESPGKR NVGRPPKRAA VPSPALTAKR GRDAGETEAG SSRHSKKRSR  660
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906730.10.0uncharacterized protein LOC112018439
TrEMBLA0A061EYH00.0A0A061EYH0_THECC; DNA-binding bromodomain-containing protein, putative
STRINGEOY094770.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.17e-61DNA-binding bromodomain-containing protein