PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03627-snap-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 299aa    MW: 31709.5 Da    PI: 5.283
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03627-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.97.2e-16218277462
                                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
                                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                                                 +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN +L k+e+++ k+  ++l ++
  maker-scaffold03627-snap-gene-0.18-mRNA-1 218 QQKQRRMIKNRESAARSRERKQAYTVELESLVTNLEEENAKLlKEEADHQKERFEQLMQN 277
                                                689************************************985378899999999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-12215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932217269IPR004827Basic-leucine zipper domain
PfamPF001707.3E-14217277IPR004827Basic-leucine zipper domain
CDDcd147074.54E-19219268No hitNo description
SuperFamilySSF579599.38E-11219270No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-14220278No hitNo description
PROSITE patternPS000360222237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASSKVVVTT NPDLPRQSSI CSLSTMLADL QQQQQQNQSM NMDDLLKNLY STSSDQFTEG  60
ATSAAGVGVG VGDKTVDEVW KEIVAGTATG TTNADNHSKV EEISGDNGNN TAEEMTLEDF  120
LTKAGAVREE DVRLGGGGGG GGALVPVAYG VNGGGGGGGG QFGMEVGFDG RMVVGGGVSA  180
VPVPLPVPVP VSVVGGGGGG GRGKRRAIEE PLLDKATQQK QRRMIKNRES AARSRERKQA  240
YTVELESLVT NLEEENAKLL KEEADHQKER FEQLMQNLIP VVEKRKPRRA LRRVNSVCW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895501.11e-139bZIP transcription factor 12-like
TrEMBLA0A2I4GE243e-83A0A2I4GE24_JUGRE; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRINGVIT_12s0055g00420.t019e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-25bZIP family protein