PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03602-snap-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 598aa    MW: 66818.2 Da    PI: 6.9013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03602-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.7e-07307328526
                                                --SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                lC  f  +G C++Gd+C+F H+
  maker-scaffold03602-snap-gene-0.18-mRNA-1 307 LCFKFVSSGSCPRGDKCNFQHD 328
                                                66666678*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.06E-417225No hitNo description
PROSITE profilePS5010314.033302330IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-7306330IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5306328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6306331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957334362IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-4336361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5339363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF541973.4E-9375457IPR011146HIT-like domain
PfamPF046775.8E-38376492IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.102.8E-6384498IPR011146HIT-like domain
PfamPF046768.2E-20514595IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.102.8E-6569591IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLF KRVSSVNKVA GPFDALICVG QFFPDSPEQL GELTDYIEGR  60
SQVPLPTYFI GDYGIGAAKH LLSASKDSAN LGFKMDGLKV CQNLFWLKGS GKFNLHGLSV  120
AYLSGRHFSD GQQFGTYTQD DVDALRAIAE DPGIFDFGVT NRASASDLPH GFSDSPGSDS  180
IIAELVAEIK PRYHIAGTKG IFYAREPYFN VDAVHVTRFL GLASVANKEK QKFIHAISPT  240
PASTMSAVEI STKPLNTTLS PYTYADQTVL AKEATKRPSD SDADSQYWRY DVSQKRQKYG  300
AGDGDRLCFK FVSSGSCPRG DKCNFQHDEN AREQSLRGVC FDFLNKGRCE RGPNCNFKHS  360
LQDEGESYSH KKRGSENATN RSRECWFCLS SPNIESHLIV SIGEYFYCAL AKGPLVQDHI  420
LIIPVEHLPN TVLLPPETEI ELGRFQNSLK SYYKNQGKSV VFFEWVSKRS THANLQAIPV  480
PSSRAAAVQD IFNLAAEKLG FKFVALRKSE NSDGRKVLRT QFDMNFSFFY VELPDGTIFS  540
HLVEENERFP AQFGREVLAG LLNMADRADW RNCSQSKEEE TKMAEDFKNQ FQEFDPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-14384595674887CWF19-like protein 2
6id1_U2e-14384595674887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023926522.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2I4GP180.0A0A2I4GP18_JUGRE; zinc finger CCCH domain-containing protein 64
STRINGXP_008242348.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923