 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold03543-augustus-gene-0.5-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 322aa MW: 36646.5 Da PI: 4.3871 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold03543-augustus-gene-0.5-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.3 | 6.3e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k
maker-scaffold03543-augustus-gene-0.5-mRNA-1 86 KKRRLTVDQVQFLEKNFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARYK 139
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 129.7 | 1.2e-41 | 86 | 177 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaL 66
kkrrl+ +qv++LE++Fe e+kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L
maker-scaffold03543-augustus-gene-0.5-mRNA-1 86 KKRRLTVDQVQFLEKNFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARYKTKQLEKDYDSL 150
9**************************************************************** PP
HD-ZIP_I/II 67 kraydalkeenerLekeveeLreelke 93
k++yd+lk + ++L ke+e+L++e+++
maker-scaffold03543-augustus-gene-0.5-mRNA-1 151 KASYDKLKIDYDNLLKEKESLTSEINS 177
**********************99975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MAGSKVYGGA SNMSVLLQNE RLPCSSEVLE PLWIPSSESS FHASKSIVNF ENVNGGDTTA 60
RPFFQQLDKD ESVDEDYDGC YHQPGKKRRL TVDQVQFLEK NFEVENKLEP DRKIQLAKDL 120
GLQPRQVAIW FQNRRARYKT KQLEKDYDSL KASYDKLKID YDNLLKEKES LTSEINSLKD 180
KLLIRENGKE NVEPLDAIKS SYAEPTQEPI SNAVSENVSN VPILVCCKQE DASSAKSDVF 240
DSDSPHYTDG NHSSLLEPAD SSHVCEPDQS DFSQDEEDNH SKILLPQTYF PKLEDGCNDD 300
QPVSYCNFVI PMEDQPFCFW NY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 133 | 141 | RRARYKTKQ |
