PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03543-augustus-gene-0.5-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HD-ZIP

Protein Properties

Length: 322aa MW: 36646.5 Da PI: 4.3871

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03543-augustus-gene-0.5-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.3e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k maker-scaffold03543-augustus-gene-0.5-mRNA-1 86 KKRRLTVDQVQFLEKNFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARYK 139 56689************************************************9 PP
2	HD-ZIP_I/II	129.7	1.2e-41	86	177	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaL 66 kkrrl+ +qv++LE++Fe e+kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L maker-scaffold03543-augustus-gene-0.5-mRNA-1 86 KKRRLTVDQVQFLEKNFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARYKTKQLEKDYDSL 150 9************************************************************** PP HD-ZIP_I/II 67 kraydalkeenerLekeveeLreelke 93 k++yd+lk + ++L ke+e+L++e+++ maker-scaffold03543-augustus-gene-0.5-mRNA-1 151 KASYDKLKIDYDNLLKEKESLTSEINS 177 ********************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-19	74	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	81	141	IPR001356	Homeobox domain
SMART	SM00389	6.8E-18	83	145	IPR001356	Homeobox domain
CDD	cd00086	2.13E-17	84	142	No hit	No description
Pfam	PF00046	3.4E-16	86	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-19	88	149	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	112	121	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	116	139	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	121	137	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.9E-17	141	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAGSKVYGGA SNMSVLLQNE RLPCSSEVLE PLWIPSSESS FHASKSIVNF ENVNGGDTTA 60 RPFFQQLDKD ESVDEDYDGC YHQPGKKRRL TVDQVQFLEK NFEVENKLEP DRKIQLAKDL 120 GLQPRQVAIW FQNRRARYKT KQLEKDYDSL KASYDKLKID YDNLLKEKES LTSEINSLKD 180 KLLIRENGKE NVEPLDAIKS SYAEPTQEPI SNAVSENVSN VPILVCCKQE DASSAKSDVF 240 DSDSPHYTDG NHSSLLEPAD SSHVCEPDQS DFSQDEEDNH SKILLPQTYF PKLEDGCNDD 300 QPVSYCNFVI PMEDQPFCFW NY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARYKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023888470.1	0.0	homeobox-leucine zipper protein ATHB-54
TrEMBL	A0A2N9EC56	0.0	A0A2N9EC56_FAGSY; Uncharacterized protein
STRING	XP_007157405.1	1e-145	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-44	homeobox protein 16