PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03489-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 320aa    MW: 35046.7 Da    PI: 5.2333
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03489-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.55.1e-17161214356
                                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                                ++kr rr+ +NRe+ArrsR+RK+a ++eLe  v++L++eN +L k+l   ++++
  maker-scaffold03489-snap-gene-0.27-mRNA-1 161 DIKRIRRMVSNRESARRSRKRKQAHLQELELQVEQLKGENASLYKQLTDATQQY 214
                                                68******************************************8888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-14156214No hitNo description
SMARTSM003381.5E-17159223IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.622161213IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-13162214No hitNo description
PfamPF001703.5E-14162213IPR004827Basic-leucine zipper domain
CDDcd147023.23E-22164215No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEQNLAEHAA ATLCSNLKRS ESELALAEFI RSPTTETRDR DTAYPFSEEL DVIFGDGDLG  60
FPFKHRDIIT LFSSCGGLTE TLLGSQHLTF KQSNNAATMD AQSSICESAI CQVSSPTSDD  120
KPNVGDNQAR GTTSGSSHDQ SDDEDAEFDV GPYEQSTDLT DIKRIRRMVS NRESARRSRK  180
RKQAHLQELE LQVEQLKGEN ASLYKQLTDA TQQYRVADTN NRVLKSDVEA LRAKVKLAED  240
MVTRGSVNST LIQLLQSHLG TPQPLNTQNL RRGPNVSPTI TVTVHGDDAS YAGMTVSGQN  300
PGIGLGHTNI NNSNMKTGIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181RRSRKRK
2175182RRSRKRKQ
3177182SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892414.10.0basic leucine zipper 9
SwissprotQ9FUD37e-71BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A2N9J9Y91e-136A0A2N9J9Y9_FAGSY; Uncharacterized protein
STRINGXP_004291263.11e-102(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-67basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]