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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold03483-snap-gene-0.23-mRNA-1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
Whirly |
| Protein Properties |
Length: 252aa MW: 27830.8 Da PI: 9.9491 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold03483-snap-gene-0.23-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 218.7 | 5.2e-68 | 85 | 223 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdl 68
s+yk+kaal+v++++p+f+ ldsg++k++++G++ll++a+a+++r+ydW++kq+f+ls+te+++lv l
maker-scaffold03483-snap-gene-0.23-mRNA-1 85 SIYKGKAALTVEPRAPEFTPLDSGAFKISKDGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVCL 152
7******************************************************************* PP
Whirly 69 askesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136
++kesceffhdp +++s+eGkvrk+lkvePlpdGsG+f+nlsv+n+l+++++s+++Pv++ae++vl+s
maker-scaffold03483-snap-gene-0.23-mRNA-1 153 GAKESCEFFHDPYKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNVDDSIYIPVTRAEYTVLIS 220
******************************************************************** PP
Whirly 137 llv 139
+++
maker-scaffold03483-snap-gene-0.23-mRNA-1 221 AFN 223
996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MLRLQSLSSP LTTQNPKLHL NLNPTKRTAL KLNPNTNINS KTSLFVVKCQ QRFTTNTSSP 60
NNSSYASQTP PAAGTFPTRF FVGHSIYKGK AALTVEPRAP EFTPLDSGAF KISKDGFVLL 120
QFAPAAGVRQ YDWSRKQVFS LSVTEIGSLV CLGAKESCEF FHDPYKGKSE EGKVRKVLKV 180
EPLPDGSGHF FNLSVQNKLL NVDDSIYIPV TRAEYTVLIS AFNFILPYLI GWHAFANSIK 240
PEETSLVNSA NP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4koo_A | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_B | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_C | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_D | 1e-108 | 73 | 240 | 2 | 169 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Carella P,Wilson DC,Cameron RK
Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis.
Front Plant Sci, 2014. 5: p. 775
[PMID:25620972] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Guan Z,Wang W,Yu X,Lin W,Miao Y
Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:30065159]
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