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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold03374-snap-gene-0.24-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MIKC_MADS |
Protein Properties |
Length: 156aa MW: 17948.1 Da PI: 8.8216 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold03374-snap-gene-0.24-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79.8 | 1.8e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
maker-scaffold03374-snap-gene-0.24-mRNA-1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
79*********************************************965 PP
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2 | K-box | 49.5 | 1.9e-17 | 88 | 156 | 15 | 83 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82
++e++ Lk+e+e Lq+ +R + G ++++++l eL Le++Le + +iRs+K+++++e+i+ l++
maker-scaffold03374-snap-gene-0.24-mRNA-1 88 LDAKEEIKLLKQEVEILQKGLRYMFGGGVGTMTLDELDVLEKHLEIWICNIRSTKMNIMYEEIQLLRN 155
56789***********************************************************9998 PP
K-box 83 k 83
k
maker-scaffold03374-snap-gene-0.24-mRNA-1 156 K 156
7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0048364 | Biological Process | root development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GTMQGLIERY MESNRGAQPE PDIETQPLDA KEEIKLLKQE VEILQKGLRY MFGGGVGTMT 120 LDELDVLEKH LEIWICNIRS TKMNIMYEEI QLLRNK
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |