PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03356-snap-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 377aa    MW: 40647.2 Da    PI: 6.6936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03356-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.7e-20146195255
                                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  maker-scaffold03356-snap-gene-0.18-mRNA-1 146 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 195
                                                7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.9E-33146204IPR001471AP2/ERF domain
SMARTSM003805.0E-36146209IPR001471AP2/ERF domain
PROSITE profilePS5103225.646146203IPR001471AP2/ERF domain
PfamPF008471.2E-13146195IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22146204IPR016177DNA-binding domain
PRINTSPR003671.3E-11147158IPR001471AP2/ERF domain
CDDcd000181.20E-14154205No hitNo description
PRINTSPR003671.3E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MFTDLSRATE MTAMVSALRH VVSGQSGGDS WGYGSSYGGG VYSASPSPPL SAYSSSSAPA  60
FASASWSGQK RGREEEEGVS QLFESIPRGY RGPSSDFRLS QGDSTSSATV KEEATNTNIV  120
ATTTTTTAPE TPTSENVEET GERRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFETAE  180
AAARAYDEAA LRFRGNRAKL NFPENVRLPP APPQPLQQNY STPSNPISIS DSPTTHLLPM  240
TLPQSFQQQF FQVQPQAYQG SSVSDYLQYS QLLQSSGDFQ LGQQPSSLLE HMFYSSQLAS  300
SASLQSSVLP SSSSLSSSSY ASSGSSSSAS FPLFSNQQLG YFRQPTNQNL NSGVGGSDLP  360
PTPPSWSDSS HYRSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23145206163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9804481e-113KM980448.1 Betula platyphylla ethylene response factor protein 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896737.11e-146ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2N9FCY51e-106A0A2N9FCY5_FAGSY; Uncharacterized protein
STRINGPOPTR_0005s21690.13e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-20ethylene response factor 110