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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold03324-augustus-gene-0.18-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
GATA |
Protein Properties |
Length: 236aa MW: 25849.4 Da PI: 5.7831 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold03324-augustus-gene-0.18-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 56.5 | 3.9e-18 | 152 | 186 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C + kTp+WR gp g+ktLCnaCG+++++ +l
maker-scaffold03324-augustus-gene-0.18-mRNA-1 152 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 186
*******************************9885 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009416 | Biological Process | response to light stimulus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MDVYGGGGGG MSSTADSNFP IDDLLDFSNE QLFSSSSSSS TDSDVTPTQN YLPTPLSLTQ 60 PIVNNGLNYH HHFSTDFTND LCAVPSDDVA ELEWLSQFVD DSFTDFPTND LAGAIAFRSE 120 ASPETGKAKR NGGERGCSQS AAAAEGGEVR RCTHCASEKT PQWRTGPLGP KTLCNACGVR 180 FKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKELT TQQQQEQMYH HHRQVC
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068804 | 1e-57 | BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds. |
GenBank | BT070054 | 1e-57 | BT070054.1 Zea mays full-length cDNA clone ZM_BFb0374G07 mRNA, complete cds. |
GenBank | BT087798 | 1e-57 | BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds. |
GenBank | EU953705 | 1e-57 | EU953705.1 Zea mays clone 1444524 mRNA sequence. |
GenBank | EU956206 | 1e-57 | EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds. |
GenBank | EU972159 | 1e-57 | EU972159.1 Zea mays clone 376596 mRNA sequence. |
GenBank | KJ726957 | 1e-57 | KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds. |