PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03296-snap-gene-0.18-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 386aa    MW: 43552.8 Da    PI: 6.4367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03296-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-081448133
                                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.T CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.k 33
                                               +g+W++eEd +l+ ++ q+G+g +W + ++++g +
  maker-scaffold03296-snap-gene-0.18-mRNA-1 14 KGPWSPEEDAKLKAYIDQHGTGgNWIALPQKVGmL 48
                                               79**************************9999944 PP

2Myb_DNA-binding37.36.2e-1296138246
                                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold03296-snap-gene-0.18-mRNA-1  96 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 138
                                                569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.466989IPR017877Myb-like domain
SuperFamilySSF466891.55E-2111136IPR009057Homeodomain-like
SMARTSM007175.5E-101391IPR001005SANT/Myb domain
PfamPF002492.1E-101489IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221596IPR009057Homeodomain-like
CDDcd001671.71E-51689No hitNo description
PROSITE profilePS5129421.66690144IPR017930Myb domain
SMARTSM007174.8E-1194142IPR001005SANT/Myb domain
PfamPF002491.5E-1096138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2397144IPR009057Homeodomain-like
CDDcd001676.41E-898140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QHGTGGNWIA LPQKVGMLSH SNKYFFLGYQ  60
RMISFDLLVN FTGLKRCGKS CRLRWLNYLR PNIKHGGFSE EEDNIICSLY ISIGSRWSII  120
AAQLPGRTDN DIKNYWNTRL KKKLLGRRKQ SNMNNMSSMG GETKDANGQE DDSYSPGLSS  180
SAFERLQLHM QLQSLQNPLS FYNNPALWPK LHPLQEQMIQ SLQSLNEFPN TPLMEHALPS  240
PQPVQGQNVG FYESPTAAKV NELEKSLHGI SSSDNSVAFI NENNSMDSTH VPKANGIEQS  300
NAGIQASVFQ AEIDNFHNTK AVDFVPQEDQ IAEFDCFKEM NVSKDGVLWW STNDFDARSA  360
SLNSWESTSV LHSQQIFHEY ELGYNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-20141447108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5000741e-58AB500074.1 Fagus crenata FcMYBR21 mRNA for transcription factor MYBR21, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912292.10.0transcription factor MYB36
SwissprotQ9FKL25e-98MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2N9H6F00.0A0A2N9H6F0_FAGSY; Uncharacterized protein
STRINGEOY317641e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-92myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]