PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03238-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 324aa    MW: 35615.5 Da    PI: 9.3767
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03238-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP97.61.1e-30174244178
                                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT- CS
                                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak 68 
                                                +CqvegC+ dl++ k+yhrrh++Ce hsk+p+v+v+g+e+r       fhelsefD++krsCrrrL++
  maker-scaffold03238-snap-gene-0.13-mRNA-1 174 RCQVEGCNIDLKSSKDYHRRHRICESHSKSPKVIVAGMERR-------FHELSEFDDKKRSCRRRLSD 234
                                                6**************************************96.......7******************* PP

                                                ------S--- CS
                                        SBP  69 hnerrrkkqa 78 
                                                hn+rrr++q+
  maker-scaffold03238-snap-gene-0.13-mRNA-1 235 HNARRRRPQP 244
                                                *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-25168229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.324172242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.16E-30173247IPR004333Transcription factor, SBP-box
PfamPF031101.5E-22175241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMDWNSKATS EWDWEKLAGF SSKTIDIPEL VQPSNHELEG GVDNTSVYSS GGGGGFSGSD  60
LGHGSSSRSS ISASADSSSK EGIKRSGTVD DFPKDFTEKN EWTRADNTGI FPSFGASISS  120
GEPIIGLKLG KRTYFEDLCV ANTTKTLPTP VTPTSPAVPG KRSRASYQST QTPRCQVEGC  180
NIDLKSSKDY HRRHRICESH SKSPKVIVAG MERRFHELSE FDDKKRSCRR RLSDHNARRR  240
RPQPEAIQFH SPGLSSSIYG DGRQQMNLLL NRVPLSAANP TWQSACNYNK VTPTGHSLTR  300
PTKTGGIDRQ LKLLTDTPEY TSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-201752411184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223240KKRSCRRRLSDHNARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874058.10.0LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3
TrEMBLA0A2I6SET71e-167A0A2I6SET7_9ROSI; SBP-box transcription factor
STRINGVIT_11s0065g00170.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-50squamosa promoter binding protein-like 2