PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold03139-augustus-gene-0.13-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 274aa MW: 32333.2 Da PI: 9.1246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03139-augustus-gene-0.13-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.8e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl maker-scaffold03139-augustus-gene-0.13-mRNA-1 22 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	75	119	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ maker-scaffold03139-augustus-gene-0.13-mRNA-1 75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.41	17	73	IPR017930	Myb domain
SuperFamily	SSF46689	3.48E-30	19	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-17	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-23	23	76	IPR009057	Homeodomain-like
CDD	cd00167	1.72E-11	24	69	No hit	No description
PROSITE profile	PS51294	19.35	74	124	IPR017930	Myb domain
SMART	SM00717	1.4E-14	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	75	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	77	123	IPR009057	Homeodomain-like
CDD	cd00167	1.20E-9	79	120	No hit	No description
SuperFamily	SSF81995	4.18E-6	142	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MNWEVMAGQL GWGMMEDEGW RKGPWTSEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKAKVTSDA SEKAKNRILR RQQFHHHQQQ QQQQQHQQLQ QQQQHQQQQQ QQQQQQLQLN 180 QVDLKRIMAL LDENDNRATC VPQMRQEMTT MYPNTNEEQG YFYSLLNSSV SVPEAANEDI 240 IWDGLWNLDD VHGNFNAASV TSRATLHNLV APFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-27	22	124	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921356.1	1e-168	transcription factor MYB13
TrEMBL	A0A2I4GSD2	1e-140	A0A2I4GSD2_JUGRE; transcription factor MYB24-like
STRING	EOY06237	1e-135	(Theobroma cacao)
STRING	cassava4.1_013947m	1e-136	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	4e-91	myb domain protein 305