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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold03134-snap-gene-0.16-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
Dof |
| Protein Properties |
Length: 224aa MW: 24950.8 Da PI: 8.9144 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold03134-snap-gene-0.16-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 86.4 | 2.7e-27 | 36 | 80 | 2 | 46 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal 46
++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+G l
maker-scaffold03134-snap-gene-0.16-mRNA-1 36 PQEHLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGQDL 80
68999************************************9765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MDGTAQWPKG QGVGLVKPLE GVAPSTRPML ERRARPQEHL NCPRCNSTNT KFCYYNNYSL 60
TQPRYFCKTC RRYWTEGQDL NLGFPAFQKY HDVSQYVQVP KIENNNSNHH NSGSASSTHL 120
SALELLRTGM ASRGLNTFIP PSMPDSTTLY SSSGFPFHEF KPTHGFSIDG LGSRYGAQEN 180
GGKLLFPFEE LKQISSTNQQ VEQNKGQGGP SGYWSSMLNG GGPW
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM478502 | 2e-35 | AM478502.2 Vitis vinifera contig VV78X197834.6, whole genome shotgun sequence. |
