 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
maker-scaffold03027-augustus-gene-0.19-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 176aa MW: 20772.3 Da PI: 7.4357 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold03027-augustus-gene-0.19-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.3 | 1.5e-19 | 21 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k++++++eq++ Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k+
maker-scaffold03027-augustus-gene-0.19-mRNA-1 21 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKN 75
45689************************************************95 PP
|
| 2 | HD-ZIP_I/II | 115.5 | 3.1e-37 | 21 | 112 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65
kkr+ls+eqv+lLE F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+++lE++y+
maker-scaffold03027-augustus-gene-0.19-mRNA-1 21 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKNQKLEEQYSG 84
9*************************************************************** PP
HD-ZIP_I/II 66 LkraydalkeenerLekeveeLreelke 93
Lkr+++++ e+++Le+ev +L+++l+e
maker-scaffold03027-augustus-gene-0.19-mRNA-1 85 LKREHETVLIEKCQLESEVLKLKDQLSE 112
*************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009733 | Biological Process | response to auxin |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
ESKPRRRRKK NKGGDASELA KKRKLSNEQV NLLEYYFCNE HKLESQRKDR LASELGLEPR 60
QVAVWFQNRR ARWKNQKLEE QYSGLKREHE TVLIEKCQLE SEVLKLKDQL SEAEKEIQRL 120
SQNVETVPTN STSSSPSVET MAEPFLGEFE MEGYNEAFYT PAFCYAHAMD WFNQYI
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 5 | 23 | RRRKKNKGGDASELAKKRK |
| 2 | 7 | 23 | RKKNKGGDASELAKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
