PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03016-augustus-gene-0.17-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 286aa    MW: 32222.4 Da    PI: 7.4756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03016-augustus-gene-0.17-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg W++eEde+l  +++ +G g W++++++ g++R++k+c++rw +yl
  maker-scaffold03016-augustus-gene-0.17-mRNA-2 14 RGLWSPEEDEKLFTYITTYGHGKWSSVPKYAGLHRCGKSCRLRWINYL 61
                                                   788*******************************************97 PP
2Myb_DNA-binding53.74.7e-1767110146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg++T eE ++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  maker-scaffold03016-augustus-gene-0.17-mRNA-2  67 RGSFTSEEKQIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 110
                                                    89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25664IPR009057Homeodomain-like
PROSITE profilePS5129419.101961IPR017930Myb domain
SuperFamilySSF466891.35E-3010108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002497.7E-151461IPR001005SANT/Myb domain
CDDcd001671.53E-111761No hitNo description
PROSITE profilePS5129425.68762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2665117IPR009057Homeodomain-like
SMARTSM007174.1E-1566114IPR001005SANT/Myb domain
PfamPF002494.4E-1567110IPR001005SANT/Myb domain
CDDcd001673.73E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDGHRCCTKM NIKRGLWSPE EDEKLFTYIT TYGHGKWSSV PKYAGLHRCG KSCRLRWINY  60
LRPDLKRGSF TSEEKQIIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS CIKKKLISQG  120
LDPSIHNLVP SHQRAYNEVA CKCNVPPNDE LSNSVFTLNS QITNAYTLEM GTPIFTVPDN  180
QPPLLQNPNP VWNQSLTDFT SFPRVSSIES TPNISSSSSS SSSLVNPSGF GLLNHENCVW  240
GDSTFAPFEA PILEGERPMR QEVLQEGEKI SEMGTNMGYS EHGCFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31111164108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899099.11e-147transcription factor MYB41-like
TrEMBLA0A2N9ECE11e-146A0A2N9ECE1_FAGSY; Uncharacterized protein
STRINGcassava4.1_025617m1e-101(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-83myb domain protein 67