PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

maker-scaffold03012-snap-gene-0.27-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 325aa MW: 36036.3 Da PI: 8.4591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03012-snap-gene-0.27-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	50	97	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL ++ ++ +K++Ka+iL +++ +k+L maker-scaffold03012-snap-gene-0.27-mRNA-1 50 IQKADREKLRRDRLNEHFVELGNVVDPN----RPKNDKATILADTIQLVKDL 97 56789******************987....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-14	47	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.395	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.02E-8	48	101	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-13	48	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-7	50	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEFIQNKQPP ISTPTTNIAQ NPRVLSTCPQ PNSSQRSEFE LKDCLSARKI QKADREKLRR 60 DRLNEHFVEL GNVVDPNRPK NDKATILADT IQLVKDLTSQ INKLQAEHAT LSEESCELTQ 120 EKNDLREEKA SLKSDIDNLN VQYQQRVRAM FPWAAMDHSV VIAPPSYPYP MAMPMPPGPI 180 PMHPSMQPYP FYGNQNPGVI PNPCSTFVPY VTANTLVEQQ STQNVSQLVH PGNPSPILGK 240 QDSRNKSSGE SKIEKKKDSN DVTTELELKT PGSTEDQSLT SGKRKSKKSW RKENNDTEGS 300 SSSRCSSSSS VKDSSSNSII GGGKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023896534.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	3e-96	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A061E687	1e-157	A0A061E687_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRING	EOX97758	1e-158	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-79	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]