PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03012-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 325aa    MW: 36036.3 Da    PI: 8.4591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03012-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-095097354
                                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                                 +  rE+ RRdr+N+ f eL  ++ ++     +K++Ka+iL  +++ +k+L
  maker-scaffold03012-snap-gene-0.27-mRNA-1 50 IQKADREKLRRDRLNEHFVELGNVVDPN----RPKNDKATILADTIQLVKDL 97
                                               56789********************987....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1447115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.3954797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-848101No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1348119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-75097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-753103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEFIQNKQPP ISTPTTNIAQ NPRVLSTCPQ PNSSQRSEFE LKDCLSARKI QKADREKLRR  60
DRLNEHFVEL GNVVDPNRPK NDKATILADT IQLVKDLTSQ INKLQAEHAT LSEESCELTQ  120
EKNDLREEKA SLKSDIDNLN VQYQQRVRAM FPWAAMDHSV VIAPPSYPYP MAMPMPPGPI  180
PMHPSMQPYP FYGNQNPGVI PNPCSTFVPY VTANTLVEQQ STQNVSQLVH PGNPSPILGK  240
QDSRNKSSGE SKIEKKKDSN DVTTELELKT PGSTEDQSLT SGKRKSKKSW RKENNDTEGS  300
SSSRCSSSSS VKDSSSNSII GGGKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896534.10.0transcription factor bHLH121
SwissprotQ9LT233e-96BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A061E6871e-157A0A061E687_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX977581e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-79bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]