PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02961-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 1582aa    MW: 172010 Da    PI: 4.386
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02961-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-0615591582226
                                                 -S---SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                                 +++ C+ f+++G+Ck G++C + H+
  maker-scaffold02961-snap-gene-0.26-mRNA-1 1559 GQRVCK-FHESGHCKKGASCDYLHP 1582
                                                 6789**.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.3E-10362420IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579037.09E-8364419IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.76365431IPR019787Zinc finger, PHD-finger
CDDcd155681.71E-21367412No hitNo description
SMARTSM002493.2E-8367413IPR001965Zinc finger, PHD-type
PROSITE patternPS013590368428IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.102.8E-27583672IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.68E-21587665IPR003121SWIB/MDM2 domain
PfamPF022017.2E-16591664IPR003121SWIB/MDM2 domain
SMARTSM001513.2E-4591669IPR019835SWIB domain
SMARTSM007192.8E-45725832IPR004343Plus-3 domain
PROSITE profilePS5136022.661725864IPR004343Plus-3 domain
SuperFamilySSF1590422.35E-26726828IPR004343Plus-3 domain
PfamPF031263.4E-20730827IPR004343Plus-3 domain
SuperFamilySSF552776.41E-2010281092IPR003169GYF domain
PROSITE profilePS5082916.79510391093IPR003169GYF domain
CDDcd000726.73E-1910391092No hitNo description
Gene3DG3DSA:3.30.1490.401.2E-1810401093IPR003169GYF domain
SMARTSM004448.8E-2210401095IPR003169GYF domain
PfamPF022134.4E-1510411085IPR003169GYF domain
PROSITE profilePS5010313.7615571582IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1582 aa     Download sequence    Send to blast
METEEDEASN LNQPSLPLQE DSAAIVCDPL EAEGPKNSDP QCAPEPESES ASESHIVGAS  60
ESQQSPPPQV AGEEALEVAD TDLGTEEKAV SDVAEKEMAV VEKKDQGESN TVAGVVVEEE  120
DEDEAQDVAD VAVVETEVKD LPKETTNLAS PAVEDRDSLG PVVAEETESA EPAVAEETDL  180
AEPEVAVETD LAEPVAAAAD DAGLEEPAAA EETDFVEPKV EEERDIMEPA VAEETELVAP  240
VDEMEDAEVE AEGEAVEEAN VGADVTEETV EAEEHLVEEE EEEEAMETED NVADVAEETT  300
DAEEAEAAEE EEVEMVEETT EAEETEAAEE MEVVEASRTS GGKRKRGKST TRAPARASTR  360
KRVEEDVCFI CFDGGDLVLC DRRGCPKAYH PSCINRDEAF FRAKGRWNCG WHLCSSCGKN  420
ANYMCYTCTF SLCKGCIKDA VILCVRGNKG FCETCMKTVL LIEHNLQGNK DMGQVDFDDK  480
SSWEYLFKDY WIDLKERLSL NLDELNQAKN PWKGGSDVPT GKQESPDELY DANNDERSDS  540
DSSSDNIEIS NSKRRRGKRR LKPRTKESNS SASAATGSGG PSMVDNAEWA SKELLEFVMH  600
MKNGDRSVLS QFDVQALLLE YIKRNKLRDP RRKSQIICDA RLESLFGKPR VGHFEMLKLL  660
ESHFLIKEDS QADDLQGSVV DTETSQLETD GNSDSLVKAS KDKKRKTRKK GDERGPQSNL  720
EDYAAIDIHN INLIYLRRNL VEELIEDMEK FQDKVVGSFV RIRISGSGQK QDLYRLVQVA  780
GTCKAAEPYK VGKRMTDTLL EILNLNKTEI ISIDIISNQE FTEGDLQEKA MALQEARVKD  840
WLETEIVRLS HLRDRASEKG QKLQLLKTPE ERQRRLEEIP EIHADPNMDP SYESEEDGGE  900
TDDKKQETYM RPRGTGFGRR PREPVSPQTG GSAFSDSWSG TRNYSTVNRD LTRSMSNKGF  960
SHKGDDTTGV GEILNEWNQG RDRETQQINS WEKQKTAASL EIDASKTQSA VKSEPTSAAA  1020
EASLSTTVAQ SAVTINETEK MWHYKDPSGK VQGPFSMVQL RKWNNTGYFP VDLRIWRITE  1080
SQDNSILLTD ALDGKFQSDP PLVDNSFLKA QGVHNLSLPS SYSSKPHGAP LQHGIEGQVG  1140
ERSNFDQNRA ALSSQSPTGM LATLSVEVPK ISIDGQSSNY QNESTNLPSP TPQSTTSATK  1200
GQPYENKWFQ NPIQPADSVV GAGSFSAGNG GLHPPAAVIP ESVLRVSENN GASSHLGVTP  1260
IPKPEKSMLA GSTDTLQMHA QSISPGADMK NSVTNFQNLV QSVANNNHPV ETQGWGGAPS  1320
QKVEPNNLAN MPAQPATHGH WGNSQSVHNS AASFSTGNPV GNFPSAGFSG LPPSDSWRHP  1380
VPVNQSNIQP PAPPPQTWGM GVAENQTAGT RPENQNTSWG PMAGNQNMPW GGLVPANSNM  1440
NWGASGPGPV PGNVTAGWVA PVQTPGNAVP GWVPPNQVPP PVSANPGWVA PGQGPPPRNA  1500
NPGWVAPTGN AGNNGDRFTN QRDRVSHGGD SGHGGSKPWN RQSSFGGGGG GGSRPSFKGQ  1560
RVCKFHESGH CKKGASCDYL HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-173614421189Histone-lysine N-methyltransferase NSD3
4gnd_C1e-173614421189Histone-lysine N-methyltransferase NSD3
4gne_A1e-173614421189Histone-lysine N-methyltransferase NSD3
4gnf_A1e-173614421189Histone-lysine N-methyltransferase NSD3
4gng_A1e-173614421189Histone-lysine N-methyltransferase NSD3
4gng_D1e-173614421189Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1552561KRRRGKRRLK
2553560RRRGKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150358e-35AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884362.10.0zinc finger CCCH domain-containing protein 19
TrEMBLA0A2I4GT010.0A0A2I4GT01_JUGRE; zinc finger CCCH domain-containing protein 19-like
STRINGXP_008236851.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding