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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02959-augustus-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34343 Da PI: 7.67 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.9e-51 | 11 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhP+deelv++yL kkv++ + +l + evd++k+ePwd+p+++ + k+wyf+++r maker-scaffold02959-augustus-gene-0.14-mRNA-1 11 LPPGFRFHPRDEELVCDYLMKKVTNCDPSL---MIEVDLNKCEPWDIPETACVGGKDWYFYTQR 71 79***********************99777...789************7777799********* PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+kyatg r+nrat+sgyWkatgkd++vl+ +g+lvg++ktLvfy+grapkg+k+dWvmhe+rl maker-scaffold02959-augustus-gene-0.14-mRNA-1 72 DRKYATGLRTNRATASGYWKATGKDRTVLR-RGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRL 134 *****************************9.999****************************98 PP NAM 129 e 129 e maker-scaffold02959-augustus-gene-0.14-mRNA-1 135 E 135 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-59 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.984 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTNCDPSL MIEVDLNKCE PWDIPETACV 60 GGKDWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRTVL RRGSLVGMRK TLVFYQGRAP 120 KGRKSDWVMH EFRLEGPLGP PKISSPKEDW VLCRVFYKNR EVAAKPSMGN CYDDTGSSTL 180 PALMDSYINF DRPQTHADEY EQVPCFSIFN QNQTSPFFTH MTNMEPNLPT TKFNTETTFK 240 GIPNNIGTCL DPFPCDAKVL KAVLSQLSNM DSNPNMKGSP SLGEGSSESY LSEVGMPNIW 300 SHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 6 | 165 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 6 | 165 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023915297.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-126 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A371ESD3 | 0.0 | A0A371ESD3_MUCPR; NAC domain-containing protein 21/22 | ||||
STRING | GLYMA15G40510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-120 | NAC domain containing protein 1 |