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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02946-augustus-gene-0.17-mRNA-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 33990.1 Da PI: 7.7309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 150 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H maker-scaffold02946-augustus-gene-0.17-mRNA-2 150 FYCDLCNKQYKLAMEFEAHLSSydH 174 78*****************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00443 | 8.2E-18 | 53 | 98 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 16.357 | 55 | 100 | IPR000467 | G-patch domain |
Pfam | PF01585 | 1.0E-15 | 56 | 96 | IPR000467 | G-patch domain |
Pfam | PF12171 | 1.6E-5 | 150 | 177 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSARDKQHHE KEQAYRDSLI EDLADDFRLP INHRLTENVD LDNVEQASLD TQLTSSNIGF 60 RLLQKMGWKG KGLGKDEQGI IEPIRSGIRD PKLGVGKQEQ DDFFTAEENI QRRKLDVEVE 120 ETEEHAKKRE VLAEREQKIQ IEVKEIRKVF YCDLCNKQYK LAMEFEAHLS SYDHNHRKIF 180 SVLKKMREMH GSSSRDDRQK REQQRQEREM AKFAQIENAR KQQQLQQQQE DSGSAPVPTE 240 VKVATALTDQ EPRKVLKFGF SSKGGTSKNS FGSAAKKKPK VAVASVFGND SDEEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875215.1 | 0.0 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A2N9EHY5 | 0.0 | A0A2N9EHY5_FAGSY; Uncharacterized protein | ||||
STRING | XP_004302330.1 | 1e-166 | (Fragaria vesca) |