 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold02926-augustus-gene-0.23-mRNA-2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
Family |
HD-ZIP |
Protein Properties |
Length: 216aa MW: 24753.5 Da PI: 9.8699 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold02926-augustus-gene-0.23-mRNA-2 | genome | THGP | View Nucleic Acid |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 86 | 140 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+ +++++ ++++ L+++l+L+ rqV vWFqNrRa+ k
maker-scaffold02926-augustus-gene-0.23-mRNA-2 86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTK 140
678899***********************************************98 PP
|
2 | HD-ZIP_I/II | 120.8 | 6.9e-39 | 86 | 174 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64
+kk+rlskeq++lLE+sF+ +++L+p +K++l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e
maker-scaffold02926-augustus-gene-0.23-mRNA-2 86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTKLKQTEVDCE 149
69************************************************************** PP
HD-ZIP_I/II 65 aLkraydalkeenerLekeveeLree 90
+Lk+++++l+een+rL+ke +eLr +
maker-scaffold02926-augustus-gene-0.23-mRNA-2 150 FLKKCCESLSEENKRLKKELQELR-S 174
***********************9.3 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MEDDEACNTK LRLGLGLDDY VPRKKRHDEK AKPVVSLDLA FALRPKQEAM NVDHKADRPS 60 FKKMERDHEY PSKENGSINN KKDGGRKKLR LSKEQASLLE DSFKIHSTLT PAQKQALSQQ 120 LNLKPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCESLSE ENKRLKKELQ ELRSLKVGPS 180 PLYIQIQKAA TLAMCTSCEK GIKANEVKGN EAVFDV
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 134 | 142 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |