PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HD-ZIP

Protein Properties

Length: 223aa MW: 25558.4 Da PI: 9.8671

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02926-augustus-gene-0.23-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.4e-19	86	138	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq Le+ F+ +++++ ++++ L+++l+L+ rqV vWFqNrRa+ maker-scaffold02926-augustus-gene-0.23-mRNA-1 86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRAR 138 678899**********************************************9 PP
2	HD-ZIP_I/II	108.4	5.2e-35	86	181	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR.......tktk 57 +kk+rlskeq++lLE+sF+ +++L+p +K++l+++L+l+prqv+vWFqnrRAR tk+k maker-scaffold02926-augustus-gene-0.23-mRNA-1 86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARkinsccrTKLK 149 69***********************************************9644444448* PP HD-ZIP_I/II 58 qlEkdyeaLkraydalkeenerLekeveeLree 90 q+E+d+e+Lk+++++l+een+rL+ke +eLr + maker-scaffold02926-augustus-gene-0.23-mRNA-1 150 QTEVDCEFLKKCCESLSEENKRLKKELQELR-S 181 ******************************9.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.04E-17	71	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-18	72	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.325	82	142	IPR001356	Homeobox domain
SMART	SM00389	9.4E-17	84	146	IPR001356	Homeobox domain
CDD	cd00086	1.59E-14	86	138	No hit	No description
Pfam	PF00046	5.2E-16	86	138	IPR001356	Homeobox domain
SMART	SM00340	1.8E-21	149	192	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.6E-10	149	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEDDEACNTK LRLGLGLDDY VPRKKRHDEK AKPVVSLDLA FALRPKQEAM NVDHKADRPS 60 FKKMERDHEY PSKENGSINN KKDGGRKKLR LSKEQASLLE DSFKIHSTLT PAQKQALSQQ 120 LNLKPRQVEV WFQNRRARKI NSCCRTKLKQ TEVDCEFLKK CCESLSEENK RLKKELQELR 180 SLKVGPSPLY IQIQKAATLA MCTSCEKGIK ANEVKGNEAV FDV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023885509.1	1e-150	homeobox-leucine zipper protein HAT14-like
Swissprot	Q0JB92	9e-51	HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBL	A0A2N9EV41	1e-123	A0A2N9EV41_FAGSY; Uncharacterized protein
STRING	XP_009342828.1	2e-76	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5664	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-52	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]