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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold02908-augustus-gene-0.24-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
MYB |
| Protein Properties |
Length: 315aa MW: 35615.9 Da PI: 5.6579 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold02908-augustus-gene-0.24-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl
maker-scaffold02908-augustus-gene-0.24-mRNA-1 23 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 53.3 | 6.4e-17 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+el++++++ lG++ W+ Ia++++ gRt++++k++w++
maker-scaffold02908-augustus-gene-0.24-mRNA-1 76 RGAFSPQEEELIIHLHAILGNR-WSQIAARLP-GRTDNEIKNFWNST 120
89********************.*********.***********986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MRKPDQMGKE RMNNTNNKSK LRKGLWSPEE DEKLMRYMLT NGQGCWSDIA RNAGLQRCGK 60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HAILGNRWSQ IAARLPGRTD NEIKNFWNST 120
LKKRFKNNTF STSTNDSDSS EPRDVIGVTP LHEHDIMNMC MDTFSSSSNS MQTLVTAGSH 180
LDPFSMLDNC YDMTGAAGLF NVPTSLPPQV GKGDAFYGDF GILGPNNMGL ERDLSLPPLE 240
SRSIEENNAM VDMKSNNNHL NNNGCFNNTS ESFKVENMFG FGNHGQGENL KMGEWDFEGL 300
MQDLSSFPYL DFPVE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
