PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02862-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 447aa    MW: 49068.4 Da    PI: 5.0981
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02862-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.27.8e-33234288155
                                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                    k r+rWtpeLHe+Fveav++LGGse+AtPk +++lm+v+gLt++hvkSHLQkYR+
  maker-scaffold02862-augustus-gene-0.23-mRNA-1 234 KSRMRWTPELHEAFVEAVNRLGGSEHATPKGVKNLMNVEGLTIYHVKSHLQKYRT 288
                                                    68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.82231291IPR017930Myb domain
SuperFamilySSF466892.51E-17232289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-30233291IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24234288IPR006447Myb domain, plants
PfamPF002499.1E-10236287IPR001005SANT/Myb domain
PfamPF143791.0E-19321366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNMHPALSVQ RSGGKQLRDM GAGAMSSSLP AFASALDYSR YPDSFHVSSG RETVTNSIST  60
QASAIVSNSN IDGRLLTSSP GFANDLIFPT VSPHGRLPQN SPFISQSSTD GASFPPSHSS  120
HQDLQSPVLI NQYEGSQDIS WCTDFLDFPD NVPVQTGQVE GATGVVTSED HTRRNDWQWA  180
DGLISEMDPD WSDLPDVNVI DPISEQTQIH QQPPVPSAEF RNVANTLSTA PPTKSRMRWT  240
PELHEAFVEA VNRLGGSEHA TPKGVKNLMN VEGLTIYHVK SHLQKYRTAR HKPESTSEGT  300
SEKKFTSIEE AKSADIKTSI DITEALRLQM ELQKRLHEQL EIQKKLQLQI ERQGQYLQEM  360
FEAQKMIEDG KSKTSTSALD DPSVPLSNAV ADVKTETLKL DQPKAGIGAS NANPTPEEGF  420
WDISQEQRAD KPGDGESNAP PTKRAKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-29234292260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920983.10.0protein PHR1-LIKE 1-like isoform X1
RefseqXP_023920984.10.0protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN52e-91PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A2N9EHF30.0A0A2N9EHF3_FAGSY; Uncharacterized protein
TrEMBLA0A2N9FQC30.0A0A2N9FQC3_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s03750.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.24e-83G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]