PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02829-snap-gene-0.27-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 516aa MW: 58553.1 Da PI: 4.826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02829-snap-gene-0.27-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.4	2.6e-48	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdk 66 lppGfrFhPtd el+++yLk+kv g + ++ +vi+e+d+yk+ PwdLp ++++++++ewyfF++r+k maker-scaffold02829-snap-gene-0.27-mRNA-1 13 LPPGFRFHPTDVELLNYYLKRKVIGAPSHF-QVISELDLYKYSPWDLPgrSQYQSSDNEWYFFCPRNK 79 79***********************988.99***********6447888999****** PP NAM 67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+a+g++ nra + gyWk +g+d+++ + ++++ g+kk+Lvfy+gr p+g +t+Wvmheyrl maker-scaffold02829-snap-gene-0.27-mRNA-1 80 KHANGSKINRANEFGYWKVSGRDRTISH-GEQNLGMKKILVFYTGRPPRGARTSWVMHEYRL 140 ***********************9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-56	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	55.75	13	161	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	14	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MPAVSNSMEN TFLPPGFRFH PTDVELLNYY LKRKVIGAPS HFQVISELDL YKYSPWDLPG 60 RSQYQSSDNE WYFFCPRNKK HANGSKINRA NEFGYWKVSG RDRTISHGEQ NLGMKKILVF 120 YTGRPPRGAR TSWVMHEYRL LDKDLDIDIQ DLYVLCRVIY KSGVQSGTPL NQENWGSCHD 180 DMLNNAAFES SQLPNQPPSQ HVMSDDDQNM SMVMKSMPVD TNAFSSSIEA FPILTESSRE 240 FTFSLEGDNN LTKVEETTWP VNNNNKNEDL FNFNQSEYEA PPSWDGCDIF KDLEDLGFLA 300 ELNNINGHYI CNSQAADCVT DQMLLEQNEF LRAAKESEID PNRGFGVHYS ERLYDPILDI 360 PTPQSIDGEP MILQEPHWSH EPLDMSSKLN NNFEVTKINE DEVLSYSPPT APRELHKEYE 420 SFSVTESGTQ SAIHSSLQSL LESIPASHAS AVENPVHNSG WSLEVQPLDK LLQINGSSKH 480 ASPTHNFQML NQPWKRASRG KGYKFVAGLV VLSGTS

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MPAVSNSMEN TFLPPGFRFH PTDVELLNYY LKRKVIGAPS HFQVISELDL YKYSPWDLPG  60
RSQYQSSDNE WYFFCPRNKK HANGSKINRA NEFGYWKVSG RDRTISHGEQ NLGMKKILVF  120
YTGRPPRGAR TSWVMHEYRL LDKDLDIDIQ DLYVLCRVIY KSGVQSGTPL NQENWGSCHD  180
DMLNNAAFES SQLPNQPPSQ HVMSDDDQNM SMVMKSMPVD TNAFSSSIEA FPILTESSRE  240
FTFSLEGDNN LTKVEETTWP VNNNNKNEDL FNFNQSEYEA PPSWDGCDIF KDLEDLGFLA  300
ELNNINGHYI CNSQAADCVT DQMLLEQNEF LRAAKESEID PNRGFGVHYS ERLYDPILDI  360
PTPQSIDGEP MILQEPHWSH EPLDMSSKLN NNFEVTKINE DEVLSYSPPT APRELHKEYE  420
SFSVTESGTQ SAIHSSLQSL LESIPASHAS AVENPVHNSG WSLEVQPLDK LLQINGSSKH  480
ASPTHNFQML NQPWKRASRG KGYKFVAGLV VLSGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-45	13	161	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-45	13	161	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-45	13	161	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-45	13	161	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-45	13	161	20	168	NAC domain-containing protein 19
3swm_B	5e-45	13	161	20	168	NAC domain-containing protein 19
3swm_C	5e-45	13	161	20	168	NAC domain-containing protein 19
3swm_D	5e-45	13	161	20	168	NAC domain-containing protein 19
3swp_A	5e-45	13	161	20	168	NAC domain-containing protein 19
3swp_B	5e-45	13	161	20	168	NAC domain-containing protein 19
3swp_C	5e-45	13	161	20	168	NAC domain-containing protein 19
3swp_D	5e-45	13	161	20	168	NAC domain-containing protein 19
4dul_A	5e-45	13	161	17	165	NAC domain-containing protein 19
4dul_B	5e-45	13	161	17	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023882990.1	0.0	uncharacterized protein LOC111995304
TrEMBL	A0A2N9IAY9	1e-150	A0A2N9IAY9_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	3e-55	NAC domain containing protein 2