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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02828-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21002.8 Da PI: 8.2277 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 215.7 | 1.4e-66 | 6 | 161 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldesl 67 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q l+ ++ + maker-scaffold02828-augustus-gene-0.10-mRNA-1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSLSWQDA---QA 66 5689**********************************************999999986...55 PP YABBY 68 keelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynr 131 ++++ +++++ ++ +s + +++ a++ +++n +ee v+rPPekrqrvPsayn+ maker-scaffold02828-augustus-gene-0.10-mRNA-1 67 PHPITPDHRNDYSSSSSSKCNSKIAMRA----PITNNATEERV----VNRPPEKRQRVPSAYNQ 122 5567776666655555544444444433....34455555544....89*************** PP YABBY 132 fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl maker-scaffold02828-augustus-gene-0.10-mRNA-1 123 FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-70 | 8 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.19E-8 | 104 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDAQAPHPI TPDHRNDYSS SSSSKCNSKI AMRAPITNNA TEERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQAK LDKASEKHLT 180 SRAALLNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090216 | 2e-77 | BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893593.1 | 1e-136 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 3e-85 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2N9IX36 | 1e-115 | A0A2N9IX36_FAGSY; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-114 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-85 | YABBY family protein |
Publications ? help Back to Top | |||
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