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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02824-augustus-gene-0.20-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 33027.6 Da PI: 8.7521 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.6 | 1.4e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhPtdeel+ +yL++++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++r maker-scaffold02824-augustus-gene-0.20-mRNA-1 9 LPPGFRFHPTDEELIIYYLRNQATSKPCPV-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFTPR 71 79****************************.89***************99999*********** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ky++g r+nrat sgyWkatg+dk+++s + + vg+kk Lvfykgr pkg ktdW+mheyrl maker-scaffold02824-augustus-gene-0.20-mRNA-1 72 DRKYPNGVRPNRATVSGYWKATGTDKAIYS-GAKYVGVKKALVFYKGRPPKGIKTDWIMHEYRL 134 ******************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-66 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.439 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-27 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEGRARSDLP PGFRFHPTDE ELIIYYLRNQ ATSKPCPVSI IPEVDIYKFD PWQLPEKAEF 60 GENEWYFFTP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGAKYVGVKK ALVFYKGRPP 120 KGIKTDWIMH EYRLTDSRKQ PKKLLGSMRL DDWVLCRIYK KRHMAKVLDP KVEESLPAPI 180 DVTLPNDAID PNVSKFPRPC SLTHLLDLEY LGPISQLLCD NSHNSNFDFQ NFIGNTGTDN 240 AERPQQGEIQ YQQYLDSGKF QLNQASIFSQ PMFLNPVYDM RGYER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-69 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-69 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-69 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-69 | 8 | 166 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-69 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-69 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-69 | 8 | 166 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893610.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | K4BWV2 | 1e-124 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A2N9J313 | 0.0 | A0A2N9J313_FAGSY; Uncharacterized protein | ||||
STRING | EOY01869 | 1e-148 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-115 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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