PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02811-augustus-gene-0.20-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 753aa    MW: 83648.7 Da    PI: 6.0206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02811-augustus-gene-0.20-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-21100155156
                                                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  maker-scaffold02811-augustus-gene-0.20-mRNA-2 100 RKKYHRHTAEQIREMEALFKESPHPDEKQRQHLSKQLGLAPRQVKFWFQNRRTQIK 155
                                                    7999************************************************9877 PP
2START229.41e-712704923206
                                                    HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSC CS
                                          START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdm 56 
                                                     ++a++el k+a+a+ep+W +s+    e++n+de++++f+ +++      +s+ea+r++gvv+ 
  maker-scaffold02811-augustus-gene-0.20-mRNA-2 270 VNQATEELTKMATAGEPLWIRSVetgrEILNYDEYMKEFSIENSsnarpkRSIEASRETGVVFV 333
                                                    67899***********************************9999******************** PP

                                                    HHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEE CS
                                          START  57 vlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.Rdf 109
                                                    +l++lv++++d++ qW+e+++    ka+t++vis+g      ga+qlm+aelq+l+plvp R++
  maker-scaffold02811-augustus-gene-0.20-mRNA-2 334 DLPRLVQSFMDVN-QWKEMFPclisKAATVDVISNGegpnknGAVQLMFAELQMLTPLVPtREV 396
                                                    *************.************************************************** PP

                                                    EEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                                          START 110 vfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                                                    +fvR+++ql+a++w+ivdvS++  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh +++
  maker-scaffold02811-augustus-gene-0.20-mRNA-2 397 YFVRFCKQLSAEQWAIVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQ 459
                                                    **************************98.9********************************** PP

                                                    SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                                          START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                                                    ++ +h ++r +v+sgla+ga++w+atlq qce+
  maker-scaffold02811-augustus-gene-0.20-mRNA-2 460 KSPVHTMYRTIVSSGLAFGARHWMATLQLQCER 492
                                                    *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2386151IPR009057Homeodomain-like
SuperFamilySSF466891.0E-2087158IPR009057Homeodomain-like
PROSITE profilePS5007117.99397157IPR001356Homeobox domain
SMARTSM003897.7E-1999161IPR001356Homeobox domain
PfamPF000461.3E-18100155IPR001356Homeobox domain
CDDcd000866.72E-17104155No hitNo description
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PROSITE profilePS5084840.702259495IPR002913START domain
SuperFamilySSF559611.26E-33261492No hitNo description
CDDcd088752.88E-113263491No hitNo description
SMARTSM002341.3E-72268492IPR002913START domain
PfamPF018523.4E-57269492IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4311487IPR023393START-like domain
SuperFamilySSF559611.92E-14521739No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MGVDMSNNPP SSRTKDFFAS PALSLSLAGI FRDAGAAATP NMEVEEGDEG SGGGGRRDDM  60
VEISSENSEP LRSRSDDEFD GEGEPDDDGA DGDKNKKKKR KKYHRHTAEQ IREMEALFKE  120
SPHPDEKQRQ HLSKQLGLAP RQVKFWFQNR RTQIKAIQER HENSLLKTEM EKLRDENKAM  180
REQINKACCP NCGTATTSRE AALTTEEQQL RIENARLKAE VEKLRSALGK YPPGSSSPSC  240
STGNDQENRS SLDFYTGIFG IEKTRIMEIV NQATEELTKM ATAGEPLWIR SVETGREILN  300
YDEYMKEFSI ENSSNARPKR SIEASRETGV VFVDLPRLVQ SFMDVNQWKE MFPCLISKAA  360
TVDVISNGEG PNKNGAVQLM FAELQMLTPL VPTREVYFVR FCKQLSAEQW AIVDVSIEKV  420
EDNIDASLVK CRKRPSGCII EDKSNGHCKV IWVEHLECQK SPVHTMYRTI VSSGLAFGAR  480
HWMATLQLQC ERLVFFMATN VPMKDSTGVA TLAGRKSILK LAQRMTWNFC RAIGASSYHT  540
WTKVSSKTGE DIRITSRKNL NDPGEPLGVI LCAVSSVWLP VSPHVLFDFL RDEAHRSEWD  600
IMASGGPAQS IANLAKGQDR GNSVAIQTMK SKENSMWVLQ DGCTNAYESM VVYAPVDITG  660
MQSVMTGCDS SNMAILPSGF SILPDGVESR PLVITSRQEE KSTEGGSLLT IAIQILTNTS  720
PTAKLSMESV ESVNTLISCT LRNIKTSLQC EDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100KKKKRK
295101KKKKRKK
397101KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875609.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2N9FB880.0A0A2N9FB88_FAGSY; Uncharacterized protein
STRINGXP_008228560.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]