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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02811-augustus-gene-0.20-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 774aa MW: 85999.5 Da PI: 6.2306 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.7e-21 | 100 | 155 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k maker-scaffold02811-augustus-gene-0.20-mRNA-1 100 RKKYHRHTAEQIREMEALFKESPHPDEKQRQHLSKQLGLAPRQVKFWFQNRRTQIK 155 7999************************************************9877 PP | |||||||
2 | START | 210.9 | 4.7e-66 | 270 | 513 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSC CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdm 56 ++a++el k+a+a+ep+W +s+ e++n+de++++f+ +++ +s+ea+r++gvv+ maker-scaffold02811-augustus-gene-0.20-mRNA-1 270 VNQATEELTKMATAGEPLWIRSVetgrEILNYDEYMKEFSIENSsnarpkRSIEASRETGVVFV 333 67899***********************************9999******************** PP HHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEE CS START 57 vlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.Rdf 109 +l++lv++++d++ qW+e+++ ka+t++vis+g ga+qlm+aelq+l+plvp R++ maker-scaffold02811-augustus-gene-0.20-mRNA-1 334 DLPRLVQSFMDVN-QWKEMFPclisKAATVDVISNGegpnknGAVQLMFAELQMLTPLVPtREV 396 *************.************************************************** PP EEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE............ CS START 110 vfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh............ 161 +fvR+++ql+a++w+ivdvS++ +++ ++s+v+++++pSg++ie+ksngh maker-scaffold02811-augustus-gene-0.20-mRNA-1 397 YFVRFCKQLSAEQWAIVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHcktsssswhfal 459 **************************98.9********************************** PP .........EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 .........skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +v+wveh +++++ +h ++r +v+sgla+ga++w+atlq qce+ maker-scaffold02811-augustus-gene-0.20-mRNA-1 460 allmifrcgLQVIWVEHLECQKSPVHTMYRTIVSSGLAFGARHWMATLQLQCER 513 *******6669*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 86 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-20 | 87 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.993 | 97 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-19 | 99 | 161 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-18 | 100 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-17 | 104 | 155 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 132 | 155 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.272 | 259 | 516 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.17E-29 | 261 | 513 | No hit | No description |
CDD | cd08875 | 4.37E-108 | 263 | 512 | No hit | No description |
SMART | SM00234 | 4.2E-65 | 268 | 513 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-51 | 269 | 513 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-14 | 542 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 774 aa Download sequence Send to blast |
MGVDMSNNPP SSRTKDFFAS PALSLSLAGI FRDAGAAATP NMEVEEGDEG SGGGGRRDDM 60 VEISSENSEP LRSRSDDEFD GEGEPDDDGA DGDKNKKKKR KKYHRHTAEQ IREMEALFKE 120 SPHPDEKQRQ HLSKQLGLAP RQVKFWFQNR RTQIKAIQER HENSLLKTEM EKLRDENKAM 180 REQINKACCP NCGTATTSRE AALTTEEQQL RIENARLKAE VEKLRSALGK YPPGSSSPSC 240 STGNDQENRS SLDFYTGIFG IEKTRIMEIV NQATEELTKM ATAGEPLWIR SVETGREILN 300 YDEYMKEFSI ENSSNARPKR SIEASRETGV VFVDLPRLVQ SFMDVNQWKE MFPCLISKAA 360 TVDVISNGEG PNKNGAVQLM FAELQMLTPL VPTREVYFVR FCKQLSAEQW AIVDVSIEKV 420 EDNIDASLVK CRKRPSGCII EDKSNGHCKT SSSSWHFALA LLMIFRCGLQ VIWVEHLECQ 480 KSPVHTMYRT IVSSGLAFGA RHWMATLQLQ CERLVFFMAT NVPMKDSTGV ATLAGRKSIL 540 KLAQRMTWNF CRAIGASSYH TWTKVSSKTG EDIRITSRKN LNDPGEPLGV ILCAVSSVWL 600 PVSPHVLFDF LRDEAHRSEW DIMASGGPAQ SIANLAKGQD RGNSVAIQTM KSKENSMWVL 660 QDGCTNAYES MVVYAPVDIT GMQSVMTGCD SSNMAILPSG FSILPDGVES RPLVITSRQE 720 EKSTEGGSLL TIAIQILTNT SPTAKLSMES VESVNTLISC TLRNIKTSLQ CEDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 100 | KKKKRK |
2 | 95 | 101 | KKKKRKK |
3 | 97 | 101 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875609.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A2N9FB88 | 0.0 | A0A2N9FB88_FAGSY; Uncharacterized protein | ||||
STRING | XP_008228560.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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