PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02779-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 662aa    MW: 73312.5 Da    PI: 7.7273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02779-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-201974156
                                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                                   +r+ +++t++q+++Le++F+++++p+ ++r++L++ lgL+ +q+k+WFqN+R++ k
  maker-scaffold02779-augustus-gene-0.16-mRNA-1 19 KRSYHRHTSHQIQQLEAFFKECPHPDDNQRRQLSRDLGLESKQIKFWFQNKRTQTK 74
                                                   688999**********************************************9987 PP
2START1357.9e-431803973206
                                                    HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH CS
                                          START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmv 57 
                                                    a +a++el++++  +ep+W ks+      + +d + ++f++++       ++ea+++s +v+m+
  maker-scaffold02779-augustus-gene-0.16-mRNA-1 180 AASAMDELIRLMRINEPLWIKSPadggFVLHRDSYEKIFPRANHftnstARVEASKDSEIVTMN 243
                                                    6789*******************988877999999999999888999999************** PP

                                                    HHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEE CS
                                          START  58 lallveellddkeqWdetla....kaetlevissg...galqlmvaelqalsplvp.RdfvfvR 113
                                                    ++ lve +l++  +W   ++    ka+t++v+++g   +   +m+ ++  lsplvp R+f f+R
  maker-scaffold02779-augustus-gene-0.16-mRNA-1 244 AMHLVEMILNSD-KWIDLFPsivtKAKTIQVLEPGmlaSRSGTMYEQMHILSPLVPpREFFFIR 306
                                                    ************.99998888888*************999999********************* PP

                                                    EEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
                                          START 114 yirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                                                    +++q + g+w+ivd S d  ++++   s  R+ +lpSg++i+ ++ng+skvtwvehv++++++ 
  maker-scaffold02779-augustus-gene-0.16-mRNA-1 307 HCQQIELGVWLIVDFSYDCSKEKT---SPSRSWKLPSGCMIQNMPNGYSKVTWVEHVEVDDKTQ 367
                                                    *****************9999987...46799*****************************999 PP

                                                    .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                                          START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                                                     h l+r l+ s +a ga +wv tl+r ce+
  maker-scaffold02779-augustus-gene-0.16-mRNA-1 368 tHRLYRDLICSNIAYGAARWVVTLKRMCER 397
                                                    8***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-22678IPR009057Homeodomain-like
SuperFamilySSF466891.21E-18677IPR009057Homeodomain-like
PROSITE profilePS5007117.0381676IPR001356Homeobox domain
SMARTSM003896.1E-171880IPR001356Homeobox domain
PfamPF000469.1E-181974IPR001356Homeobox domain
CDDcd000865.03E-171977No hitNo description
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PROSITE profilePS5084843.495169400IPR002913START domain
SuperFamilySSF559611.06E-28172399No hitNo description
CDDcd088757.21E-103173396No hitNo description
SMARTSM002344.9E-29178397IPR002913START domain
PfamPF018523.6E-36180397IPR002913START domain
Gene3DG3DSA:3.30.530.208.1E-7198362IPR023393START-like domain
SuperFamilySSF559611.02E-12418625No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
SGGGGSGDEQ EHSNARKGKR SYHRHTSHQI QQLEAFFKEC PHPDDNQRRQ LSRDLGLESK  60
QIKFWFQNKR TQTKAQNERA DNSTLRSEND KIQCENLAIR EALKNHEKVS CLLAKYIGKP  120
ISQIESSNPM LGSSMDVPAA ISRNQGPGAA LDQGHGSSSP LTDQFKKISD TEKPLVLETA  180
ASAMDELIRL MRINEPLWIK SPADGGFVLH RDSYEKIFPR ANHFTNSTAR VEASKDSEIV  240
TMNAMHLVEM ILNSDKWIDL FPSIVTKAKT IQVLEPGMLA SRSGTMYEQM HILSPLVPPR  300
EFFFIRHCQQ IELGVWLIVD FSYDCSKEKT SPSRSWKLPS GCMIQNMPNG YSKVTWVEHV  360
EVDDKTQTHR LYRDLICSNI AYGAARWVVT LKRMCERYTY SMDDIAPTGI GGLGVLNLPE  420
GKRSIMKLSH RMVKNFCGML SMTGKLDFPQ LNEVNNSGVR VSVRKSSEPG QPCGMIVSAA  480
TSLWLPLPSH HVFSFFREEK TRVQWDVLSS GNPVHEIARI ASGAHPGNCV SVIRPYIPTE  540
NNMLMLQETC TDTMGSLVVY APMDIPAINI AMNGEDSSEV PILPSGFIIS GDGRPETGTI  600
DASTSANAVR SGGSLLTVAF QILVSSPSSL KQLNVESVAT VNTLISSTVQ RIKASLNCSG  660
LD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870350.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2N9EEN70.0A0A2N9EEN7_FAGSY; Uncharacterized protein
STRINGEMJ161970.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11