PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02751-augustus-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 296aa    MW: 34474.6 Da    PI: 7.4259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02751-augustus-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-50201481128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 
                                                    + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk  + ++kewyfF+ r
  maker-scaffold02751-augustus-gene-0.20-mRNA-1  20 MLPGFRFHPTDEELVGFYLRRKVQKKPISI-ELIKQTDIYKYDPWDLPKVSNVGDKEWYFFCIR 82 
                                                    579***************************.89***************888889********** PP

                                            NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126
                                                     +ky+++ r+nr+t sg+Wkatg dk+++s    +e +glkk+Lv+y+g+a kg+ktdW+mhe+
  maker-scaffold02751-augustus-gene-0.20-mRNA-1  83 GRKYRNSIRPNRVTGSGFWKATGIDKPIYSVqePHECIGLKKSLVYYRGSAGKGTKTDWMMHEF 146
                                                    *****************************97545566*************************** PP

                                            NAM 127 rl 128
                                                    rl
  maker-scaffold02751-augustus-gene-0.20-mRNA-1 147 RL 148
                                                    98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5619176IPR003441NAC domain
PROSITE profilePS5100554.07520177IPR003441NAC domain
PfamPF023653.2E-2522148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEVAKVSSTE NNNDEDNEVM LPGFRFHPTD EELVGFYLRR KVQKKPISIE LIKQTDIYKY  60
DPWDLPKVSN VGDKEWYFFC IRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSVQEPHECI  120
GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP NGKCSNLTNA DSAQEAEVWT LCRIFKRIPS  180
YKKYAPNWKE TSSKQNPTDS SPKTCSLDSD NSEPYISFED SVFQQHNECK PYIQQVDERN  240
HYFVGHLNTL NQAPFTPSYS SFWNPSGDDF FTKENWDELR PVVQLASDPS YVYNCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-482218319171NO APICAL MERISTEM PROTEIN
1ut4_B5e-482218319171NO APICAL MERISTEM PROTEIN
1ut7_A5e-482218319171NO APICAL MERISTEM PROTEIN
1ut7_B5e-482218319171NO APICAL MERISTEM PROTEIN
3swm_A5e-482218322174NAC domain-containing protein 19
3swm_B5e-482218322174NAC domain-containing protein 19
3swm_C5e-482218322174NAC domain-containing protein 19
3swm_D5e-482218322174NAC domain-containing protein 19
3swp_A5e-482218322174NAC domain-containing protein 19
3swp_B5e-482218322174NAC domain-containing protein 19
3swp_C5e-482218322174NAC domain-containing protein 19
3swp_D5e-482218322174NAC domain-containing protein 19
4dul_A5e-482218319171NAC domain-containing protein 19
4dul_B5e-482218319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894515.10.0transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK557e-99NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1Q3AW761e-158A0A1Q3AW76_CEPFO; NAM domain-containing protein (Fragment)
STRINGVIT_12s0028g00860.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-98NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]