PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02742-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 351aa    MW: 39632.8 Da    PI: 9.6288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02742-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-183176147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                                   rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  maker-scaffold02742-augustus-gene-0.19-mRNA-1 31 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 76
                                                   899*****************************.***********996 PP
2Myb_DNA-binding57.14.2e-1883126146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    r ++++eE+++l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  maker-scaffold02742-augustus-gene-0.19-mRNA-1  83 RRPFSEEEEDRLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 126
                                                    679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9852677IPR017930Myb domain
SuperFamilySSF466891.31E-2929124IPR009057Homeodomain-like
SMARTSM007178.4E-153079IPR001005SANT/Myb domain
PfamPF002493.8E-173176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-273284IPR009057Homeodomain-like
CDDcd001671.11E-133475No hitNo description
PROSITE profilePS5129427.45378132IPR017930Myb domain
SMARTSM007171.2E-1582130IPR001005SANT/Myb domain
PfamPF002493.0E-1583125IPR001005SANT/Myb domain
CDDcd001678.08E-1285125No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2185131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSNNSIARPA MEDSAGAAGS SDDAKSASCP RGHWRPAEDE KLRQLVEQYG AQNWNSIAEK  60
LQGRSGKSCR LRWFNQLDPR INRRPFSEEE EDRLLAAHRI HGNKWALIAR LFPGRTDNAV  120
KNHWHVIMAR KQREQSKLCG KRTYQEVNYN YSKTSSTNFL GRKPISQGDH LSSSSRAGSE  180
STSRIFEFRN PTKERMFADS PSSSSLSWNF ASLPTVSSNS SSLELFMRRQ GRACFNSSSN  240
NFINSECSKR SDQYLHRYHP NSSVHHGSYQ GSTTYGLVPN YTKVVPSPFG CFNLGSDYET  300
NGRNRRELVS FCNNSPTLTK LRATTEHEQG DESIEHKDIP FIDFLGVGIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31311317107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871731.10.0transcription factor MYB117-like
TrEMBLA0A2N9FGM70.0A0A2N9FGM7_FAGSY; Uncharacterized protein
STRINGXP_006473036.11e-137(Citrus sinensis)
STRINGXP_006434346.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-65myb domain protein 52